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Answer: Answer: HaplotypeCaller VCF depth is greater than the number of reads in bam
5 months ago by pragnapcu • 0
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2
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875
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Why the number of reads in bam generated by GATK haplotype caller are more than the bam generated after GATK baserecalibrator
BaseRecalibrator BAM GATK READ HaplotypeCaller
5 months ago by pragnapcu • 0
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875
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Comment: Comment: Why the number of reads in bam generated by GATK haplotype caller are more than
5 months ago by pragnapcu • 0
0
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1
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383
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How do I integrate GRCh38 CADD v1.6 offline with ANNOVAR?
CADD v1.6 ANNOVAR
updated 5 months ago by ★ 1.8k • written 5 months ago by • 0
0
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1
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713
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Answer: Answer: How to detect de novo variants with trio-data
11 months ago by pragnapcu • 0
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498
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Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
11 months ago by pragnapcu • 0
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507
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Comment: Comment: How Haplotypecaller could call a 17-bp duplication that is not seen in sorted ba
11 months ago by pragnapcu • 0
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2
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507
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Comment: Comment: How Haplotypecaller could call a 17-bp duplication that is not seen in sorted ba
11 months ago by pragnapcu • 0
2
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5
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507
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How Haplotypecaller could call a 17-bp duplication that is not seen in sorted bam (in IGV)?
BaseRecalibrator IGV GATK HaplotypeCaller frameshiftinsertion
11 months ago by pragnapcu • 0
0
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0
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498
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Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
11 months ago by pragnapcu • 0
0
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4
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498
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Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplication?
BAM IGV GATK duplication
11 months ago by pragnapcu • 0
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0
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480
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Comment: Comment: How to Visualize unmapped bam generated from GATK FastqToSam?
11 months ago by pragnapcu • 0
2
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2
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480
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How to Visualize unmapped bam generated from GATK FastqToSam?
FastqToSam UnmappedBam GATK
11 months ago by pragnapcu • 0
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441
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How can I give dbscsv11.txt.gz and dbscsv11.txt.gz.tbi to tableannovar --protocol instead of dbscsv11.txt and dbscsv11.txt.tbi?
dbscsnv GATK Annovar
11 months ago by pragnapcu • 0
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1
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2.0k
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Comment: Comment: gCNVKERNEL Error while using GATK 4.1
12 months ago by pragnapcu • 0
0
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1
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829
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Comment: Comment: Why different read depth on IGV and in VCF for a variant
13 months ago by pragnapcu • 0
2
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3
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829
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Why different read depth on IGV and in VCF for a variant
depth GATK read haplotypecaller IGV
updated 13 months ago by 8.8k • written 13 months ago by • 0
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1
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403
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How can I identify common variants in siblings with same disorder after joint calling?
joint calling variants common Shared
updated 13 months ago by 157k • written 13 months ago by • 0
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298
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How do I get single multianno.txt file for multiple samples from Annovar?
joint table_annovar.pl GATK Annovar typing
13 months ago by pragnapcu • 0
0
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1
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536
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How to select dataset from 1000 genome
1000genomes vcf
updated 6 months ago by 40k • written 2.1 years ago by • 0
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2
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1.1k
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Comment: Comment: Where do I get a WES dataset of size <1GB
2.1 years ago by pragnapcu • 0
3
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5
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1.1k
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Where do I get a WES dataset of size <1GB
WGS WES genomics
updated 2.1 years ago by ★ 2.9k • written 2.1 years ago by • 0
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