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Requesting Insights on Potential Complex Structural Event Indicated by IGV
Manta IGV variant translocation structural
14 days ago by pragnapcu • 0
0
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2
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282
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Error Reading gencode.v38.genes.json.gz File in SvAnna CLI Tool
Structural-Variant SVAnna
7 weeks ago by pragnapcu • 0
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2
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1.1k
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Why the number of reads in bam generated by GATK haplotype caller are more than the bam generated after GATK baserecalibrator
BaseRecalibrator BAM GATK READ HaplotypeCaller
11 months ago by pragnapcu • 0
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1
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651
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How do I integrate GRCh38 CADD v1.6 offline with ANNOVAR?
CADD v1.6 ANNOVAR
updated 12 months ago by ★ 2.1k • written 12 months ago by • 0
2
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5
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692
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How Haplotypecaller could call a 17-bp duplication that is not seen in sorted bam (in IGV)?
BaseRecalibrator IGV GATK HaplotypeCaller frameshiftinsertion
18 months ago by pragnapcu • 0
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4
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662
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Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplication?
BAM IGV GATK duplication
18 months ago by pragnapcu • 0
2
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2
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614
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How to Visualize unmapped bam generated from GATK FastqToSam?
FastqToSam UnmappedBam GATK
18 months ago by pragnapcu • 0
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524
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How can I give dbscsv11.txt.gz and dbscsv11.txt.gz.tbi to tableannovar --protocol instead of dbscsv11.txt and dbscsv11.txt.tbi?
dbscsnv GATK Annovar
18 months ago by pragnapcu • 0
3
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3
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1.1k
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Why different read depth on IGV and in VCF for a variant
depth GATK read haplotypecaller IGV
updated 20 months ago by 8.9k • written 20 months ago by • 0
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1
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514
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How can I identify common variants in siblings with same disorder after joint calling?
joint calling variants common Shared
updated 20 months ago by 161k • written 20 months ago by • 0
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0
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455
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How do I get single multianno.txt file for multiple samples from Annovar?
joint table_annovar.pl GATK Annovar typing
20 months ago by pragnapcu • 0
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1
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642
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How to select dataset from 1000 genome
1000genomes vcf
updated 13 months ago by 43k • written 2.7 years ago by • 0
3
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5
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1.3k
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Where do I get a WES dataset of size <1GB
WGS WES genomics
updated 2.7 years ago by ★ 2.9k • written 2.7 years ago by • 0
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