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0
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0
replies
257
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Comment:
Comment: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
14 days ago by
octpus616
▴ 100
2
votes
2
replies
257
views
What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc
NGS
14 days ago by
octpus616
▴ 100
1
vote
1
reply
206
views
How to Annotating Human Genomic Variants for Disease Associations?
R
variant-annotation
GWAS
updated 11 weeks ago by
Ram
43k • written 11 weeks ago by
octpus616
▴ 100
0
votes
0
replies
381
views
Comment:
Comment: ATCC cell line source
3 months ago by
octpus616
▴ 100
0
votes
2
replies
381
views
ATCC cell line source
cell-line
NGS
ATCC
3 months ago by
octpus616
▴ 100
1
vote
1
reply
735
views
Comment:
Comment: How the first sequencing template removed in pair end sequencing
6 months ago by
octpus616
▴ 100
0
votes
0
replies
735
views
Comment:
Comment: How the first sequencing product removed in pair end sequencing
6 months ago by
octpus616
▴ 100
5
votes
7
replies
735
views
How the first sequencing template removed in pair end sequencing
NGS
RNA-seq
WGS
sequence
updated 6 months ago by
GenoMax
141k • written 6 months ago by
octpus616
▴ 100
0
votes
0
replies
271
views
how simply mutation annotation in R?
annotation
RNA-seq
Bioconductor
7 months ago by
octpus616
▴ 100
0
votes
0
replies
743
views
Comment:
Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
7 months ago by
octpus616
▴ 100
0
votes
2
replies
743
views
STAR mapping two pass mode for multiple samples with split steps or one step ?
STAR
RNA-seq
7 months ago by
octpus616
▴ 100
0
votes
0
replies
909
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
7 months ago by
octpus616
▴ 100
0
votes
0
replies
909
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
7 months ago by
octpus616
▴ 100
0
votes
1
reply
909
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
7 months ago by
octpus616
▴ 100
7
votes
6
replies
909
views
Best practices scRNA-seq guide for beginer
scRNA-seq
eBook
7 months ago by
octpus616
▴ 100
0
votes
0
replies
318
views
Make a variation record dict from vcf by pysam quickly
pysam
python
vcf
8 months ago by
octpus616
▴ 100
0
votes
0
replies
718
views
Comment:
Comment: How to convert dnsnp in UCSC to gtf
8 months ago by
octpus616
▴ 100
2
votes
4
replies
718
views
How to convert dnsnp in UCSC to gtf
UCSC
dnsnp
gtf
8 months ago by
octpus616
▴ 100
0
votes
0
replies
718
views
Comment:
Comment: How to convert dnsnp in UCSC to gtf
8 months ago by
octpus616
▴ 100
2
votes
1
reply
516
views
bedtools random without strand and no overlap
bedtools
genome
bed
updated 10 months ago by
ATpoint
81k • written 10 months ago by
octpus616
▴ 100
0
votes
0
replies
536
views
Comment:
Comment: Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
11 months ago by
octpus616
▴ 100
1
vote
2
replies
536
views
Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
NGS
vcf
1000
1kg
genome
11 months ago by
octpus616
▴ 100
0
votes
0
replies
357
views
rtracklayer import.chain not accpect chain file
R
rtracklayer
liftOver
11 months ago by
octpus616
▴ 100
6
votes
1
reply
464
views
what is IGV visualization lighter color variants stand for
visualization
vcf
IGV
updated 12 months ago by
Jorge Amigo
14k • written 12 months ago by
octpus616
▴ 100
0
votes
0
replies
922
views
Comment:
Comment: Calculation method of RMSMappingQuality
13 months ago by
octpus616
▴ 100
0
votes
2
replies
922
views
Calculation method of RMSMappingQuality
NGS
bam
samtools
vcf
13 months ago by
octpus616
▴ 100
0
votes
0
replies
346
views
How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
vcf
bcftools
shapeit2
phase
NGS
updated 10 months ago by
Ram
43k • written 13 months ago by
octpus616
▴ 100
0
votes
0
replies
340
views
Get RMS MQ for specific POS
vcf
bam
MQ
13 months ago by
octpus616
▴ 100
2
votes
1
reply
663
views
bcftools merge without multiallelic sites
NGS
bcftools
vcf
updated 13 months ago by
raphael.B
▴ 520 • written 13 months ago by
octpus616
▴ 100
0
votes
0
replies
1.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
13 months ago by
octpus616
▴ 100
0
votes
0
replies
1.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
13 months ago by
octpus616
▴ 100
0
votes
0
replies
1.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
13 months ago by
octpus616
▴ 100
3
votes
7
replies
1.6k
views
Does running samtools sort in parallel result in unexpected output due to temporary file conflicts?
NGS
samtools
bam
updated 10 months ago by
Ram
43k • written 13 months ago by
octpus616
▴ 100
0
votes
0
replies
488
views
Annotate a series of genomic intervals using R as detailed as possible
bed
bioconductor
annotation
R
14 months ago by
octpus616
▴ 100
0
votes
0
replies
416
views
What is the different bewteen ucsc simple repeat and tandem repeat
reference
USCS
annotation
hg38
14 months ago by
octpus616
▴ 100
0
votes
0
replies
1.4k
views
Comment:
Comment: samtools calmd and original base quality
14 months ago by
octpus616
▴ 100
2
votes
2
replies
1.4k
views
samtools calmd and original base quality
NGS
bam
samtools
14 months ago by
octpus616
▴ 100
0
votes
0
replies
934
views
Comment:
Comment: GATK haplotypeCaller output MQ in vcf for non variant sites
15 months ago by
octpus616
▴ 100
0
votes
2
replies
934
views
GATK haplotypeCaller output MQ in vcf for non variant sites
vcf
MQ
GATK
NGS
15 months ago by
octpus616
▴ 100
0
votes
1
reply
1.2k
views
Comment:
Comment: Get length of the alignment from bam file with shell
15 months ago by
octpus616
▴ 100
1
vote
2
replies
1.2k
views
Comment:
Comment: Get length of the alignment from bam file with shell
15 months ago by
octpus616
▴ 100
1
vote
6
replies
1.2k
views
Get length of the alignment from bam file with shell
NGS
sam
pysam
samtools
bam
updated 15 months ago by
cmdcolin
★ 3.8k • written 15 months ago by
octpus616
▴ 100
0
votes
1
reply
1.6k
views
Comment:
Comment: Samtools view -e not work
15 months ago by
octpus616
▴ 100
0
votes
0
replies
1.6k
views
Comment:
Comment: Samtools view -e not work
16 months ago by
octpus616
▴ 100
0
votes
1
reply
1.6k
views
Comment:
Comment: Samtools view -e not work
16 months ago by
octpus616
▴ 100
0
votes
7
replies
1.6k
views
Samtools view -e not work
NGS
bam
sam
samtools
updated 15 months ago by
Ram
43k • written 16 months ago by
octpus616
▴ 100
0
votes
0
replies
1.7k
views
Comment:
Comment: How to determine the encoding method of quality score in a fastaq file?
16 months ago by
octpus616
▴ 100
0
votes
0
replies
1.7k
views
Comment:
Comment: How to determine the encoding method of quality score in a fastaq file?
16 months ago by
octpus616
▴ 100
4
votes
6
replies
1.7k
views
How to determine the encoding method of quality score in a fastaq file?
fastq
NGS
samtools
bwa
16 months ago by
octpus616
▴ 100
0
votes
0
replies
1.7k
views
Comment:
Comment: How to determine the encoding method of quality score in a fastaq file?
16 months ago by
octpus616
▴ 100
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