User: tirichl

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tirichl20
Reputation:
20
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New User
Location:
Wüzrburg
Last seen:
2 months ago
Joined:
9 months, 2 weeks ago
Email:
t************@web.de

Posts by tirichl

<prev • 4 results • page 1 of 1 • next >
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Find cooccurences of factors across multiple files
... Hey, I have several hundred files that look like this: a.file #genomic positions 1, 3, 4, 9, 10 #factors a, b, d, g Each file holds multiple genomic positions (numbers) and factors (characters). I want to investigate, whether there are genomic positions that frequently co-occu ...
gene chip-seq sequencing written 9 weeks ago by tirichl20 • updated 9 weeks ago by jordi.planells330
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Comment: C: rgb to hex in GRanges Object in R
... Hey, It worked with `K562.hmm$V9 <- sapply(strsplit(K562.hmm$V9, ","), function(x) rgb(x[1], x[2], x[3], maxColorValue=255))` Thank you for your help! :) ...
written 3 months ago by tirichl20
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Comment: C: rgb to hex in GRanges Object in R
... Thank you for your answer! There is no distinct error: When i import a file with hex-values, it just doesn't recognizes them and prints NA only. ...
written 3 months ago by tirichl20
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rgb to hex in GRanges Object in R
... Hey, I have the following problem: using the `karyoploteR` package in R, i want to plot chromatin configuration along the genome as a colored bar. The GRanges Object with the chromatin regions has a column for that ("V9") with rgb values associated with each region. However, the `kpPlotRegions` func ...
R bioinformatic chip-seq written 3 months ago by tirichl20 • updated 3 months ago by Friederike6.7k

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