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Comment: Comment: Pattern match using R Biostrings
18 months ago by asumani ▴ 70
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1
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1.1k
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Comment: Comment: Pattern match using R Biostrings
18 months ago by asumani ▴ 70
0
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0
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1.1k
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Comment: Comment: Pattern match using R Biostrings
18 months ago by asumani ▴ 70
1
vote
7
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1.1k
views
Pattern match using R Biostrings
biostrings pattern
updated 18 months ago by 87k • written 18 months ago by ▴ 70
1
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5
replies
810
views
How to filter BLAST database before search?
BLAST Entrez EntrezQuery
updated 21 months ago by ★ 27k • written 21 months ago by ▴ 70
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0
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810
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Comment: Comment: How to filter BLAST database before search?
21 months ago by asumani ▴ 70
0
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1
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810
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Comment: Comment: How to filter BLAST database before search?
21 months ago by asumani ▴ 70
0
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0
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3.6k
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Comment: Comment: Algorithm to remove batch effects
2.9 years ago by asumani ▴ 70
0
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1
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3.6k
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Comment: Comment: Algorithm to remove batch effects
2.9 years ago by asumani ▴ 70
0
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1
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1.3k
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Comment: Comment: Group Genes by Protein Coding/Non-coding feature
2.9 years ago by asumani ▴ 70
1
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5
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1.3k
views
Group Genes by Protein Coding/Non-coding feature
NON-CODING GENE ID_CONVERSION CODING
updated 2.9 years ago by 141k • written 2.9 years ago by ▴ 70
2
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1
reply
397
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Compatilibity between human37 and human38 gtf
GRCh37v75
updated 3.0 years ago by 47k • written 3.0 years ago by ▴ 70
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0
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2.0k
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Comment: Comment: Duplicated Gene Symbol names after geneID conversion
3.0 years ago by asumani ▴ 70
1
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2
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2.0k
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Duplicated Gene Symbol names after geneID conversion
geneID
updated 3.0 years ago by 141k • written 3.0 years ago by ▴ 70
7
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6
replies
1.4k
views
What happens if a UMI fragment has a PCR artefact?
unique moleculer identifier
updated 3.4 years ago by 19k • written 3.4 years ago by ▴ 70
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2
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1.4k
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Comment: A: What happens if a UMI fragment has a PCR artefact?
3.4 years ago by asumani ▴ 70
0
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1
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1.2k
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Comment: C: Normalization for subset of data
3.4 years ago by asumani ▴ 70
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3
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1.2k
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Normalization for subset of data
statistics scRNAseq
3.4 years ago by asumani ▴ 70
0
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0
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2.3k
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Comment: C: How do I convert Hisat2 + stringtie gtf to EVM compatible gff3
3.5 years ago by asumani ▴ 70
0
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1
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1.2k
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Comment: A: Differential Expression Analysis in Single cell RNAseq
3.5 years ago by asumani ▴ 70
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0
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1.2k
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Comment: C: Differential Expression Analysis in Single cell RNAseq
3.5 years ago by asumani ▴ 70
4
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6
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1.2k
views
Differential Expression Analysis in Single cell RNAseq
single-cell RNAseq methods normalization
3.5 years ago by asumani ▴ 70
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1
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1.2k
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Comment: C: Differential Expression Analysis in Single cell RNAseq
3.5 years ago by asumani ▴ 70
4
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6
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926
views
How reproducible is the DEG analysis?
DEG Analysis
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 70
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0
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2.4k
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Comment: C: PC1 vs PC2 in separating healthy vs disease
3.6 years ago by asumani ▴ 70
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1
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2.4k
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Comment: C: PC1 vs PC2 in separating healthy vs disease
3.6 years ago by asumani ▴ 70
0
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0
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2.4k
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Comment: C: PC1 vs PC2 in separating healthy vs disease
3.6 years ago by asumani ▴ 70
4
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8
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2.4k
views
PC1 vs PC2 in separating healthy vs disease
pca rna-seq
3.6 years ago by asumani ▴ 70
0
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2
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2.4k
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Comment: C: PCA1 vs PCA2 in separating healthy vs disease
3.6 years ago by asumani ▴ 70
0
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1
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1.2k
views
Comment: C: Gene vs Transcript Level DEG Analysis
3.6 years ago by asumani ▴ 70
11
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3
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1.2k
views
Gene vs Transcript Level DEG Analysis
ballgown RNA-Seq
3.6 years ago by asumani ▴ 70
0
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0
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926
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Comment: C: How reproducible is the DEG analysis?
3.6 years ago by asumani ▴ 70
0
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1
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926
views
Comment: C: How reproducible is the DEG analysis?
3.6 years ago by asumani ▴ 70
0
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0
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926
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Comment: C: How reproducible is the DEG analysis?
3.6 years ago by asumani ▴ 70
2
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1
reply
784
views
Quality Control After Alignment
quality control RNA-Seq HISAT2 scRNA-Seq
3.6 years ago by asumani ▴ 70
1
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0
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784
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Answer: A: Quality Control After Alignment
3.6 years ago by asumani ▴ 70
0
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0
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2.9k
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Comment: C: How to handle DNA methylation duplication in Bismark?
3.6 years ago by asumani ▴ 70
0
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0
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1.3k
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Comment: C: limma DEG analysis with count matrix as input
3.6 years ago by asumani ▴ 70
0
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2
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1.3k
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limma DEG analysis with count matrix as input
meta-analysis limma microarray
3.7 years ago by asumani ▴ 70
0
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0
replies
540
views
Comment: C: Random 24mers as control data-set
4.0 years ago by asumani ▴ 70
1
vote
2
replies
540
views
Random 24mers as control data-set
rna-seq R
4.0 years ago by asumani ▴ 70
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