User: Andrea_Bio

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Andrea_Bio2.2k
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Posts by Andrea_Bio

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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... you are right - i was able to contact someone with dbSNP 132 installed. TAbles are there called SNPInd ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... dbSNPq developers also didnt respond. I emailed them months ago :( ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... i was able to access the latest version of dbSNP. The tables are indeed there. The dbSNPq site was extremely misleading! ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... see page 12 http://nar.oxfordjournals.org/content/39/suppl_1/D901/suppl/DC1 These tables have gone http://cgsmd.isi.edu/dbdoc/db.php?db=dbsnp_human_132 ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... hi - i agree with your edits. My point was that I cannot see how to get this data from the database directly!! I don't have a local installation of dbSNP 132. I am using dbSNPq. The interesting thing is that the tables i seem to be missing did exist a few months ago on dbSNPq (release 131) and were ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... hi - i agree with your edits. My point was that I cannot see how to get this data from the database directly!! I don't have a local installation of dbSNP 132. I am using dbSNPq. The interesting thing is that the tables i seem to be missing did exist a few months ago on dbSNPq (release 131 - i forget ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... i deleted a comment because it wasn't concentrating when i wrote it and wrote the wrong thing and caused confusion. To summarize I agree with MD's edit ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Biomart Vs Intermine Vs Atlas
... HI Joachim - i second that comment. My virtual mart is fine for speed. Even a mart sitting on top of the ensembl server is fast. ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... this was version 128 btw ...
written 4.4 years ago by Andrea_Bio2.2k
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Comment: C: Dbsnp Individual Genotyping Information For Specific Snps
... Genotype information for populations as a whole is definitely in the database but individual genotype information does not appear to be. It isn't in the VCF files either as far as I can see - that is population based too. I'm not saying I expected it to be there (because of the reasons mentioned by ...
written 4.4 years ago by Andrea_Bio2.2k

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