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questions
17
votes
6
replies
28k
views
Convert a Seurat object to .h5ad file
single-cell
RNA-Seq
seurat
R
scanpy
18 months ago by
gaelgarcia05
▴ 280
3
votes
2
replies
3.3k
views
Full list of KING options and paramenters
KING
PLINK
IBD
kinship
relatedness
updated 5.8 years ago by
Wei-Min Chen
• 0 • written 6.0 years ago by
gaelgarcia05
▴ 280
4
votes
3
replies
2.3k
views
Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
snp
ExAC
1000Genomes
MAF
sequencing
5.9 years ago by
gaelgarcia05
▴ 280
2
votes
6
replies
2.3k
views
VariantsToBinaryPed tool missing from GATK4?
gatk
gatk4
gatk3
plink
king
6.0 years ago by
gaelgarcia05
▴ 280
0
votes
1
reply
3.2k
views
Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk
macosx
ulimit
gatk3
unix
updated 6.0 years ago by
Alex Reynolds
35k • written 6.0 years ago by
gaelgarcia05
▴ 280
3
votes
6
replies
3.8k
views
Cannot run or build KING on Mac OS X
KING
PLINK
IBD
dylib
error
6.0 years ago by
gaelgarcia05
▴ 280
10
votes
5
replies
14k
views
Why Am I Getting So Many Unmapped Reads In Star, Classified As "Too Short"?
RNA-seq
STAR
updated 16 months ago by
Ram
43k • written 10.9 years ago by
gaelgarcia05
▴ 280
6
votes
3
replies
5.6k
views
Estimating Dispersions In Deseq: Which Is Best, All Conditions At Once, Or Each Condition Comparison Individually?
deseq
rna-seq
r
edger
bioconductor
updated 7.5 years ago by
Biostar
20 • written 11.0 years ago by
gaelgarcia05
▴ 280
0
votes
1
reply
3.0k
views
How Do Tophat Options -G , --Supress-Hits, And Bowtie Options Interplay?
rnaseq
rna-seq
tophat
tophat2
bowtie
updated 8.5 years ago by
cclementddel
▴ 20 • written 10.9 years ago by
gaelgarcia05
▴ 280
2
votes
1
reply
3.1k
views
What Happened To -K In Tophat For Multiple-Mapping Reads?
multiple-alignment
tophat2
rna-seq
tophat
updated 2.6 years ago by
Ram
43k • written 10.9 years ago by
gaelgarcia05
▴ 280
6
votes
3
replies
5.5k
views
Does Tophat Use The Library-Type Information For Mapping, Or Just For The Xs Flag?
tophat
rna-seq
rnaseq
mapping
reads
updated 10.6 years ago by
Kanne
▴ 450 • written 10.9 years ago by
gaelgarcia05
▴ 280
3
votes
4
replies
3.1k
views
Which Strand Of The Mrna Molecule Does The Sequencer Output As A "Read"?
illumina
rna-seq
10.9 years ago by
gaelgarcia05
▴ 280
0
votes
1
reply
8.5k
views
Purpose Of Y-Shaped Adapters In Illumina Sequencing?
illumina
adaptor
sequencing
rna-seq
10.9 years ago by
gaelgarcia05
▴ 280
2
votes
2
replies
3.2k
views
Deseq Standard Comparison Or Multifactorial / Model Fitting?
deseq
rnaseq
rna-seq
r
statistics
11.0 years ago by
gaelgarcia05
▴ 280
2
votes
6
replies
3.3k
views
Split A Bam File Into Smaller Files By Tile Number
samtools
tophat
updated 11.0 years ago by
Pierre Lindenbaum
161k • written 11.0 years ago by
gaelgarcia05
▴ 280
6
votes
10
replies
8.2k
views
Split A Bam File Into Several Files Containing All The Alignments For X Number Of Reads.
bam
sam
rna-seq
unix
bwa
tophat
bedtools
updated 11.0 years ago by
sjneph
▴ 690 • written 11.0 years ago by
gaelgarcia05
▴ 280
3
votes
2
replies
5.6k
views
Local Alignment Of Short Reads: Mosaik, Bowtie2, Bwa?
bowtie2
bwa
local
alignment
updated 11.0 years ago by
lh3
33k • written 11.0 years ago by
gaelgarcia05
▴ 280
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