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questions
0
votes
0
replies
110
views
Inferring cell identity/genotype in single cells with missing information
cell
seurat
single
score
9 days ago by
txema.heredia
▴ 110
0
votes
3
replies
375
views
Single cell demultiplexing using 10x and TotalSeq-B
demultiplexing
cellranger
antibodies
single-cell
5 weeks ago by
txema.heredia
▴ 110
2
votes
3
replies
551
views
Can I infer the fraction of replicating cells from bulk RNA-seq data?
replication
apoptosis
updated 7 months ago by
Ram
43k • written 7 months ago by
txema.heredia
▴ 110
2
votes
1
reply
496
views
DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
RNA-seq
deseq2
updated 7 months ago by
swbarnes2
14k • written 7 months ago by
txema.heredia
▴ 110
2
votes
7
replies
1.1k
views
Tool to search for missing genes among genome annotation versions?
annotation
updated 8 months ago by
LauferVA
4.2k • written 8 months ago by
txema.heredia
▴ 110
0
votes
1
reply
636
views
Help manually processing strand in paired-end reads when fishing for lariats in bulk RNA-seq
lariat
splicing
rna-seq
10 months ago by
txema.heredia
▴ 110
0
votes
0
replies
362
views
Differential Gene Expression analysis in heterogeneous tissues
RNA-seq
deseq2
updated 10 months ago by
Ram
43k • written 10 months ago by
txema.heredia
▴ 110
0
votes
0
replies
412
views
BULK mRNA-seq with UMIs. Does it make sense to run bedtools genomecov?
RNAseq
gene-length
normalization
13 months ago by
txema.heredia
▴ 110
13
votes
21
replies
3.0k
views
6 follow
Aberrant splicing in bulk RNAseq
aberrant-splicing
transcript
isoform
exon
updated 11 months ago by
sbt_gvs
• 0 • written 14 months ago by
txema.heredia
▴ 110
8
votes
13
replies
1.7k
views
Mapped reads not mapping to a real sequence?
bam
sam
samtools
kallisto
14 months ago by
txema.heredia
▴ 110
16
votes
7
replies
1.9k
views
BULK mRNA-seq with UMIs. Do I need to normalize by gene length?
mRNA
UMI
normalization
illumina
DESeq2
updated 14 months ago by
Matthias Zepper
4.5k • written 15 months ago by
txema.heredia
▴ 110
2
votes
4
replies
1.4k
views
Retrieving individual cells from scRNA-seq bigWig files?
single cell
RNA-Seq
scRNA-seq
bigwig
updated 4.0 years ago by
GouthamAtla
12k • written 4.0 years ago by
txema.heredia
▴ 110
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