User: m.s_tabatabaei

Reputation:
0
Status:
New User
Last seen:
4 months, 3 weeks ago
Joined:
10 months, 2 weeks ago
Email:
m*************@yahoo.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by m.s_tabatabaei

<prev • 7 results • page 1 of 1 • next >
0
votes
0
answers
170
views
0
answers
Blastx against nr for plants
... Hi every one, I run the Blastx aginst nr using this commend line " blastx -db blastdb_Nr/Blast_Nr -query Query -taxidlist 33090.txids -evalue 1.0e-5 -num_threads 23 -word_size 3 -max_target_seqs 1 -max_hsps 1 -outfmt 6 -out res_blastx I got this error that " `Taxonomy ID(s) not found. ...
software error written 4 months ago by m.s_tabatabaei0 • updated 4 months ago by lieven.sterck10k
0
votes
0
answers
159
views
0
answers
to identify target genes of miRNAs using psRNATarget
... Hi every one, I am going to predict the target genes of miRNAs using psRNATarget. I am using a genome assembly consisting of long contigs as the scaffold and there isn't any GFF3 file for my plant species. The problem is that when the contigs, identified by psRNATarget, are subjected to BLASTX, a ...
rna-seq written 6 months ago by m.s_tabatabaei0
0
votes
1
answer
540
views
1
answers
Comment: A: Can anyone suggest me the pipeline for de novo prediction of miRNAs?
... Hi Harshraje, I have the same problem as your problem. I am working on small RNA data on plant in which there isn't any annotated reference genome for it. Could you please let me know if you got your answer. I am so thankful if you let me know which pipeline and tool you found to be good for plant ...
written 8 months ago by m.s_tabatabaei0
0
votes
0
answers
127
views
0
answers
small RNA seq on plant
... Hi everyone, I am working on small RNA seq on plant. Could you please guide me on which pipeline is better for plants without an annotated reference genome. which one of these tools" miRDeep2, miRDeep-p2, miRA" is the best or suggest me another one. Thank you, Mina ...
next-gen written 8 months ago by m.s_tabatabaei0
0
votes
0
answers
280
views
0
answers
Comment: C: Small RNA Seq Analysis for newcomers...
... Hi Tushar, I am searching to find a good pipeline for plant small RNA seq. I worked with annotation and merge pipeline on CLC but I don't know which data in output should be considered as input to analyze differential expression. I worked with miRDeep2 as well but I am not sure it is good for plant ...
written 8 months ago by m.s_tabatabaei0
0
votes
0
answers
280
views
0
answers
Comment: C: Small RNA Seq Analysis for newcomers...
... Hi Tushar, Could you please let me know which pipeline you found to small RNA seq analysis? I am starting to analyze small RNA seq and your suggestion will help me a lot and I appreciate you a lot. Thanks ...
written 10 months ago by m.s_tabatabaei0
0
votes
0
answers
152
views
0
answers
(Closed) small RNA seq
... Hi every one, I am starting to analyze small RNA data from **plants**. Could you please guide me on which pipeline is good? Is there any pipeline on the galaxy to use it? How can I download Rfam data to identify and filter of noncoding RNAs from my data? Thanks a lot for your guidance, Mina ...
rna-seq written 10 months ago by m.s_tabatabaei0

Latest awards to m.s_tabatabaei

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2691 users visited in the last hour
_