User: jrmerritt6

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jrmerritt60
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Answer: A: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
... Use `bedtools intersect`. Here I'm using the `narrowPeak` files from `MACS2`, but this can be adapted to any file that has chr, st, end as the first three columns. Concatenate `narrowPeak` files, coordinate sort, then merge peaks within 10 bp cat ${SampleName}_1_peaks.narrowPeak ${SampleName}_ ...
written 3 months ago by jrmerritt60

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