User: linxzh1989

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linxzh198960
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China
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Posts by linxzh1989

<prev • 38 results • page 1 of 4 • next >
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Comment: C: what does miRNA* mean?
... Thank yourfor your answer. In my mind, novel miRNAs seem to be not in the miRbase but they have a miRNA-like structure. Is it necessary to check miRNA* for novel miRNA? ...
written 5 weeks ago by linxzh198960
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what does miRNA* mean?
... I am reading a paper about miRNA and confused by a fig. ![enter image description here][1] [1]: http://i.imgur.com/yKXw8Ja.png In "Novel miRNA for which miRNA* were found", what does miRNA* mean in the context? Does it mean reverse-complement sequence of miRNA? I hope someone could give me so ...
mirna written 5 weeks ago by linxzh198960 • updated 5 weeks ago by Michael Dondrup41k
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Comment: C: Combine multilple genome to one genome
... Yes, I will try to make a genome consensus sequence by alignments ;) ...
written 10 weeks ago by linxzh198960
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Comment: C: Combine multilple genome to one genome
... Now I have 5 genomes from different rice specie. If there would be a combination of genome, it will easy and fast to find some interesting region. It is just a lazy way. ...
written 10 weeks ago by linxzh198960
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Comment: C: Combine multilple genome to one genome
... Thank you for your advice, I will find some resources about genome graph representation. ...
written 10 weeks ago by linxzh198960
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Combine multilple genome to one genome
... I have a question about how to combine multiple genomes from different rice species to one genome. These rice species have close genetic relationship. I knon this question sounds weird, but I really want to find ways to combine these genomes. At first glance of this question, I will blast A geno ...
genome written 10 weeks ago by linxzh198960
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Comment: C: Error when running SNPEff
... The gff seems ok, I fixed this error by using version 4.1l. It's a strange error. ...
written 5 months ago by linxzh198960
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Error when running SNPEff
... I want to anntate SNP in vcf format generated by GATK. Reference fasta and gff files were downloaded from http://www.phytozome.net/, Citrus clementina. Make directory `data/cle` and `data/genomes`, ```bash data ├── cle │   ├── genes.gff └── genomes └── cle.fa ``` Adding referen ...
snpeff snp written 5 months ago by linxzh198960
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Find DEG between sample with replicates and sample without replicates
... Hi all. I just try to find differentially expressed genes between sample with replicates and sample without replicates. I know this sound weird, but I think it's better than nothing. Does anyone have encountered this problem and give some advices? ...
rna-seq written 6 months ago by linxzh198960 • updated 6 months ago by Farbod2.9k
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set chromosome width in biopython
... Hi, I was trying to draw a single chromosome in biopython. Everything goes well, except the width of the chromosome in the figure. I found the output chromosome size is based on the output page size. Is there any way to restrict the chromosome size except setting page size?   ...
biopython written 13 months ago by linxzh198960 • updated 13 months ago by Peter5.4k

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Popular Question 19 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
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