User: linxzh1989

gravatar for linxzh1989
linxzh198960
Reputation:
60
Status:
Trusted
Location:
China
Last seen:
2 days, 13 hours ago
Joined:
4 years, 1 month ago
Email:
l*********@gmail.com

about me

Posts by linxzh1989

<prev • 38 results • page 1 of 4 • next >
0
votes
1
answer
86
views
1
answers
Comment: C: what does miRNA* mean?
... Thank yourfor your answer. In my mind, novel miRNAs seem to be not in the miRbase but they have a miRNA-like structure. Is it necessary to check miRNA* for novel miRNA? ...
written 2 days ago by linxzh198960
4
votes
1
answer
86
views
5 follow
1
answer
what does miRNA* mean?
... I am reading a paper about miRNA and confused by a fig. ![enter image description here][1] [1]: http://i.imgur.com/yKXw8Ja.png In "Novel miRNA for which miRNA* were found", what does miRNA* mean in the context? Does it mean reverse-complement sequence of miRNA? I hope someone could give me so ...
mirna written 3 days ago by linxzh198960 • updated 3 days ago by Michael Dondrup40k
0
votes
0
answers
153
views
0
answers
Comment: C: Combine multilple genome to one genome
... Yes, I will try to make a genome consensus sequence by alignments ;) ...
written 5 weeks ago by linxzh198960
0
votes
0
answers
153
views
0
answers
Comment: C: Combine multilple genome to one genome
... Now I have 5 genomes from different rice specie. If there would be a combination of genome, it will easy and fast to find some interesting region. It is just a lazy way. ...
written 5 weeks ago by linxzh198960
0
votes
0
answers
153
views
0
answers
Comment: C: Combine multilple genome to one genome
... Thank you for your advice, I will find some resources about genome graph representation. ...
written 5 weeks ago by linxzh198960
2
votes
0
answers
153
views
0
answers
Combine multilple genome to one genome
... I have a question about how to combine multiple genomes from different rice species to one genome. These rice species have close genetic relationship. I knon this question sounds weird, but I really want to find ways to combine these genomes. At first glance of this question, I will blast A geno ...
genome written 5 weeks ago by linxzh198960
0
votes
1
answer
240
views
1
answers
Comment: C: Error when running SNPEff
... The gff seems ok, I fixed this error by using version 4.1l. It's a strange error. ...
written 4 months ago by linxzh198960
0
votes
1
answer
240
views
1
answer
Error when running SNPEff
... I want to anntate SNP in vcf format generated by GATK. Reference fasta and gff files were downloaded from http://www.phytozome.net/, Citrus clementina. Make directory `data/cle` and `data/genomes`, ```bash data ├── cle │   ├── genes.gff └── genomes └── cle.fa ``` Adding referen ...
snpeff snp written 4 months ago by linxzh198960
1
vote
2
answers
213
views
2
answers
Find DEG between sample with replicates and sample without replicates
... Hi all. I just try to find differentially expressed genes between sample with replicates and sample without replicates. I know this sound weird, but I think it's better than nothing. Does anyone have encountered this problem and give some advices? ...
rna-seq written 5 months ago by linxzh198960 • updated 5 months ago by Farbod2.9k
0
votes
1
answer
330
views
1
answer
set chromosome width in biopython
... Hi, I was trying to draw a single chromosome in biopython. Everything goes well, except the width of the chromosome in the figure. I found the output chromosome size is based on the output page size. Is there any way to restrict the chromosome size except setting page size?   ...
biopython written 12 months ago by linxzh198960 • updated 12 months ago by Peter5.3k

Latest awards to linxzh1989

Popular Question 3 months ago, created a question with more than 1,000 views. For genes fpkm value of Coexpression module detected by WGCNA
Great Question 7 months ago, created a question with more than 5,000 views. For Volcano Plot Of Significantly Differential Exp Genes
Popular Question 9 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 10 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 12 months ago, created a question with more than 1,000 views. For Creat A Db By Maketranscriptdbfromgff Of Genomicfeatures In Bioconductor
Supporter 14 months ago, voted at least 25 times.
Popular Question 18 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Volcano Plot Of Significantly Differential Exp Genes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 680 users visited in the last hour