User: l0o0

gravatar for l0o0
l0o090
Reputation:
90
Status:
Trusted
Location:
China
Last seen:
3 days, 9 hours ago
Joined:
4 years, 5 months ago
Email:
l*********@gmail.com

about me

Posts by l0o0

<prev • 44 results • page 1 of 5 • next >
1
vote
3
answers
146
views
3
answers
Comment: C: Icons of popular model organisms?
... I saw some people use [ggtree](http://bioconductor.org/packages/release/bioc/html/ggtree.html) and emojifont to draw organisms in emoji. I hope this will help. ...
written 24 days ago by l0o090
0
votes
0
answers
85
views
0
answers
calculate LOD between markers
... I am building a genetic map using joinmap4 with a F1 population of 148 samples, including 20k snp markers. Now, I am trying to filter adjacent markers whose LOD is less than 2. I know LOD can be calculated in joinmap, but it is quite a large date for joinmap to do that. So I am looking for som ...
snp genetic dna written 28 days ago by l0o090
0
votes
0
answers
110
views
0
answers
tools to display gene number in go by level
... Hi, I am looking for some online tools to plot gene number in go term by level. The plot looks like below ![enter image description here][1] Now, I have a gene2go mapping file, and a list of target genes. Any available online tools or R/python tools is appreciative. [1]: http://o9vsiutjo.bk ...
gene go written 6 weeks ago by l0o090
0
votes
2
answers
153
views
2
answers
Comment: C: How to fix my broken GTF file?
... I think you can get gene region on genome by your gtf file. Ignore UTR region. You can try to get the start and end position of a gene. The start and end position should in the first and last exon's boundary, these exons should belong to the same gene. ...
written 8 weeks ago by l0o090
1
vote
1
answer
418
views
1
answers
Answer: A: Biopython on the web (Flask or Django)
... I think Flask is written in python, so you can handle this job as how you treat your data in python script. Here is a small flask app to upload a fasta file and then get sequence id of fasta file. import os from flask import Flask, request, redirect, url_for, send_from_directory fr ...
written 8 weeks ago by l0o090
0
votes
0
answers
115
views
0
answers
qPCR to validate gene FPKM is 0 in RNA-Seq
... Hi, I got my RNA-Seq expression Data in FPKM, then I pick some interested genes to validate by qPCR. The expression table of FPKM and qPCR in like below: [You can see this table](https://ibb.co/cHoOkk) or download from [google driver](https://drive.google.com/open?id=0Bxeiu-r4CJrJQkhBb3B2ekZvNkU ...
rna-seq qpcr written 8 weeks ago by l0o090
0
votes
1
answer
219
views
1
answers
Comment: C: what does miRNA* mean?
... Thank yourfor your answer. In my mind, novel miRNAs seem to be not in the miRbase but they have a miRNA-like structure. Is it necessary to check miRNA* for novel miRNA? ...
written 4 months ago by l0o090
4
votes
1
answer
219
views
5 follow
1
answer
what does miRNA* mean?
... I am reading a paper about miRNA and confused by a fig. ![enter image description here][1] [1]: http://i.imgur.com/yKXw8Ja.png In "Novel miRNA for which miRNA* were found", what does miRNA* mean in the context? Does it mean reverse-complement sequence of miRNA? I hope someone could give me so ...
mirna written 4 months ago by l0o090 • updated 4 months ago by Michael Dondrup42k
0
votes
0
answers
260
views
0
answers
Comment: C: Combine multilple genome to one genome
... Yes, I will try to make a genome consensus sequence by alignments ;) ...
written 5 months ago by l0o090
0
votes
0
answers
260
views
0
answers
Comment: C: Combine multilple genome to one genome
... Now I have 5 genomes from different rice specie. If there would be a combination of genome, it will easy and fast to find some interesting region. It is just a lazy way. ...
written 5 months ago by l0o090

Latest awards to l0o0

Great Question 5 weeks ago, created a question with more than 5,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Volcano Plot Of Significantly Differential Exp Genes
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Volcano Plot Of Significantly Differential Exp Genes
Popular Question 7 months ago, created a question with more than 1,000 views. For genes fpkm value of Coexpression module detected by WGCNA
Great Question 11 months ago, created a question with more than 5,000 views. For Volcano Plot Of Significantly Differential Exp Genes
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 14 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 17 months ago, created a question with more than 1,000 views. For Creat A Db By Maketranscriptdbfromgff Of Genomicfeatures In Bioconductor
Supporter 18 months ago, voted at least 25 times.
Popular Question 22 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.9 years ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Volcano Plot Of Significantly Differential Exp Genes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 436 users visited in the last hour