User: linxzh1989

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linxzh198960
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Posts by linxzh1989

<prev • 36 results • page 1 of 4 • next >
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Comment: C: Combine multilple genome to one genome
... Yes, I will try to make a genome consensus sequence by alignments ;) ...
written 7 days ago by linxzh198960
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Comment: C: Combine multilple genome to one genome
... Now I have 5 genomes from different rice specie. If there would be a combination of genome, it will easy and fast to find some interesting region. It is just a lazy way. ...
written 7 days ago by linxzh198960
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Comment: C: Combine multilple genome to one genome
... Thank you for your advice, I will find some resources about genome graph representation. ...
written 7 days ago by linxzh198960
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Combine multilple genome to one genome
... I have a question about how to combine multiple genomes from different rice species to one genome. These rice species have close genetic relationship. I knon this question sounds weird, but I really want to find ways to combine these genomes. At first glance of this question, I will blast A geno ...
genome written 7 days ago by linxzh198960
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Comment: C: Error when running SNPEff
... The gff seems ok, I fixed this error by using version 4.1l. It's a strange error. ...
written 3 months ago by linxzh198960
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Error when running SNPEff
... I want to anntate SNP in vcf format generated by GATK. Reference fasta and gff files were downloaded from http://www.phytozome.net/, Citrus clementina. Make directory `data/cle` and `data/genomes`, ```bash data ├── cle │   ├── genes.gff └── genomes └── cle.fa ``` Adding referen ...
snpeff snp written 3 months ago by linxzh198960
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Find DEG between sample with replicates and sample without replicates
... Hi all. I just try to find differentially expressed genes between sample with replicates and sample without replicates. I know this sound weird, but I think it's better than nothing. Does anyone have encountered this problem and give some advices? ...
rna-seq written 3 months ago by linxzh198960 • updated 3 months ago by Farbod2.9k
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set chromosome width in biopython
... Hi, I was trying to draw a single chromosome in biopython. Everything goes well, except the width of the chromosome in the figure. I found the output chromosome size is based on the output page size. Is there any way to restrict the chromosome size except setting page size?   ...
biopython written 10 months ago by linxzh198960 • updated 10 months ago by Peter5.3k
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Answer: A: can picard use multiple threads?
... I have the same problem. And finally found solutions in picard faq. You can not set number of threads for some picard packages, but you can set threads number for java Try to the code below: java -XX:ParallelGCThreads=<num of threads> -jar <picard-package-name>.jar   I hope this w ...
written 11 months ago by linxzh198960
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Comment: C: Split bam by multiple chromosome to a single bam file
... Hi dariober. I've tested your commands, and it works. Thanks for your replay. ...
written 12 months ago by linxzh198960

Latest awards to linxzh1989

Popular Question 10 weeks ago, created a question with more than 1,000 views. For genes fpkm value of Coexpression module detected by WGCNA
Great Question 6 months ago, created a question with more than 5,000 views. For Volcano Plot Of Significantly Differential Exp Genes
Popular Question 8 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 9 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 11 months ago, created a question with more than 1,000 views. For Creat A Db By Maketranscriptdbfromgff Of Genomicfeatures In Bioconductor
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Popular Question 17 months ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How To Visualize Large Set Of Data(Fpkm Of Genes, 80 Data)
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Volcano Plot Of Significantly Differential Exp Genes

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