User: eridanus

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eridanus0
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Posts by eridanus

<prev • 13 results • page 1 of 2 • next >
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Comment: C: update salmon with conda
... thank you for your answer! I tried your suggestion and it says PackagesNotFoundError..hmm maybe should I try docker..? ...
written 3 days ago by eridanus0
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update salmon with conda
... I have installed Salmon with conda. However, I think that an old version has been installed (I get some errors). How could I update with conda? I have tried conda update salmon but nothing happened. I could not install manually that s the reason I used conda. Any solutions? Thank you! ...
rna-seq written 3 days ago by eridanus0 • updated 3 days ago by dariober11k
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Comment: C: for go enrichment analysis which tool do you recommend?
... What do you mean exactly with setting the background? Thank you! ...
written 17 days ago by eridanus0
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Comment: C: for go enrichment analysis which tool do you recommend?
... hmm the truth is I am interested in Homo Sapiens, so maybe AgriGO is not the perfect tool? ...
written 18 days ago by eridanus0
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Comment: C: for go enrichment analysis which tool do you recommend?
... Thank you a lot for your reply, I ll check it! So DAVID, do you think it is outdated and not as useful anymore? ...
written 18 days ago by eridanus0
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for go enrichment analysis which tool do you recommend?
... Hello. I would like to ask if you believe that DAVID is ok for GO enrichment analysis or should I pick another web based or R tool? Thank you in advance. ...
rna-seq go written 18 days ago by eridanus0 • updated 18 days ago by Hamid Ghaedi450
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Comment: C: PCA plot, less points than samples
... Yes you are right. Thank you for your response! ...
written 20 days ago by eridanus0
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Comment: C: PCA plot, less points than samples
... ![enter image description here][1] This is my PCA plot. The clustering is not that good, but in differential expression analysis I can see differences in expression. Should I remove some samples? What do you think? Thank you! [1]: https://i.ibb.co/kDsF6qS/biostars.png ...
written 20 days ago by eridanus0 • updated 20 days ago by ATpoint40k
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Comment: A: PCA plot, less points than samples
... ![enter image description here][1] This is my PCA plot. I checked and finally all the samples are included. I wonder if I should remove some samples from the differential expression analysis. WHat do you think? [1]: https://ibb.co/GM4j3C5 ...
written 20 days ago by eridanus0
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Comment: C: PCA plot, less points than samples
... thank you. I tried and it is 12. I thought about overlapping, but then I added the labels, and I thought that if there was overlapping it would be obvious in the labels (that was not the case). what can I do about overlapping? Thank you a lot! ...
written 21 days ago by eridanus0

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