User: geethus2009

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Posts by geethus2009

<prev • 11 results • page 1 of 2 • next >
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algorithm to construct template
... given a target sequence. how do we construct a template ?. which method, the algorithm is the best? suggestion, please I would like to do as a python program ...
sequence written 7 weeks ago by geethus20090
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how to generate a three dimensional structure of protein ?
... which is better pairwise sequence alignment or multiple sequence alignment to generate 3 d of protein? how to get template structure of sequence which provide more sequence similarity? I have come across some web server that offers 3d structure prediction? is it possible to get the source code of t ...
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3 d protein structure predcition
... can anyone tell me what are different steps to follows to predict 3d protein structure [ template-based modeling approach in homologous - target ] thank you in advance your support makes me to learn faster ...
alignment sequence written 9 weeks ago by geethus20090 • updated 9 weeks ago by devarora150
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Comment: C: program to do 3 d prediction in python 3.7
... thank you for your reply I am a newcomer to this field. I would like to know is there any program[python 3.7] to implement 3 d protein structure prediction. so that how to do 3d prediction 100% clear to do? Sir, Can you please share with me the various steps - different stage involved, no of input ...
written 9 weeks ago by geethus20090
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program to do 3 d prediction in python 3.7
... like to have a link to a program code that help me understand the work follow to generate 3d structure prediction ...
sequence alignment written 10 weeks ago by geethus20090 • updated 10 weeks ago by Mensur Dlakic5.8k
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HOW TO RESOLVE "SyntaxError: unexpected EOF while parsing " IN PYTHON 3.7
... E_VALUE_THRESH = 0.04 for alignment in b_record.alignments: for hsp in alignment.hsps: if hsp.expect < E_VALUE_THRESH: print '****Alignment****' print 'sequence:', alignment.title print 'length:', alignment.length ...
python written 10 weeks ago by geethus20090 • updated 9 weeks ago by lakhujanivijay5.1k
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python code to do pairwise sequence alignment
... from Bio import pairwise2 alignments = pairwise2.align.globalxx("ACCGT", "ACG") print(alignments) output [('ACCGT', 'A-CG-', 3.0, 0, 5), ('ACCGT', 'AC-G-', 3.0, 0, 5)] Is it possible to get ACCGT A_CG_ OR ACCGT AC_G_ [PYTHON 3 ] ...
sequence alignment written 10 weeks ago by geethus20090
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Comment: C: to extract fasta file from PDB and obtain the content of file only as protein se
... code should be for python 3 for record in SeqIO.parse(pdb_file, 'pdb-atom'): ^ SyntaxError: unexpected EOF while parsing Plase resolve is problem also for me ...
written 10 weeks ago by geethus20090
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to extract fasta file from PDB and obtain the content of file only as protein sequence
... is there any python code to extract fasta file from PDB for a given protein_id(eg:- 1mkp) ...
assembly sequence alignment written 10 weeks ago by geethus20090 • updated 10 weeks ago by Mensur Dlakic5.8k
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Comment: C: using python for pairwise alignment
... is it possible to perform pairwise sequence alignment sequence 1:target sequence sequence 2: sequence extract from NCBI PDB based on PDB id like 1mkp ...
written 10 weeks ago by geethus20090

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