User: eli

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eli0
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Posts by eli

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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
... yes, there is GTF file and i have it ...
written 2 days ago by eli0
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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
... thank you for reply kevin deseq2 result: partial my up genes: logFC adj p value Zm00001d041070_T001 269.4464931 3.64950283 0.186943942 19.52191008 7.15E-85 1.61E-81 Zm00001d037029_T001 114.0862173 7.672199837 0.398213312 19.26655789 1.03E-82 2.18E-79 Zm00001d039335_T001 136.486 ...
written 3 days ago by eli0 • updated 3 days ago by Kevin Blighe59k
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Comment: C: Filtering in RNA-Seq to get Differentially Expressed lncRNA
... hi kevin Do you faver me? I need help. I have analyzied my RNA-Seq data. I have used this tools: Download sequences(SRA) from ncbi database. FastQC (Check quality of sequencing). Trimmomatic(the quality of each raw library is analyzed and sequencing adapters and bad quality reads are removed) I hav ...
written 3 days ago by eli0
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Comment: C: how can I get novel long non coding RNA from RNA-seq data?
... Thank for your help. The genome I used was zea mays. can i use deseq2 result to figure out which gene ID is coding and which is noncoding? ...
written 3 days ago by eli0
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how can I get novel long non coding RNA from RNA-seq data?
... Hi all, I have analyzied my RNA-Seq data. I have used this tools: Download sequences(SRA) from ncbi database. FastQC (Check quality of sequencing). Trimmomatic(the quality of each raw library is analyzed and sequencing adapters and bad quality reads are removed) I have used paired end datas as input ...
rna-seq lncrna written 4 days ago by eli0 • updated 4 days ago by Michael Dondrup47k
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Comment: C: i cant correspond gene ID
... This is part of my data: Zm00001d042263_T001 3130.583035 -5.00107158 0.209939378 -23.82150325 2.00E-125 7.64E-121 Zm00001d029720_T001 193.4226998 -6.048107207 0.259497668 -23.30698097 3.77E-120 7.20E-116 Zm00001d016394_T001 808.2234005 -8.942291132 0.403892549 -22.14027257 1.29E-108 1.6 ...
written 22 days ago by eli0 • updated 22 days ago by genomax83k
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i cant correspond gene ID
... hello, i have gene ID from Deseq2, How can I find the official gene ID correspond to the gtf file? ...
R next-gen rna-seq written 22 days ago by eli0

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