User: Nir London

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Nir London220
Reputation:
220
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Website:
http://rosettadesigngr...
Last seen:
7 years ago
Joined:
8 years, 8 months ago
Email:
l*******@gmail.com

Posts by Nir London

<prev • 12 results • page 1 of 2 • next >
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Sar Software
... Hi, What SAR (Structure Activity Relationship) software would you recommend? Could be QSAR, could be R-group analysis. Doesn't have to be freely available. I know there are huge lists of software out there, I want to know what people are actually using and would recommend. Thanks, ...
chemoinformatics written 7.0 years ago by Nir London220
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Comment: C: Small Molecule Superposition Tool
... Do you know of a specific tool or API command? or generally assume they have one? ...
written 7.3 years ago by Nir London220
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Small Molecule Superposition Tool
... Hi Everyone, Does anyone knows of a good tool for the super-positioning of small molecules? Preferably from command-line/scriptable. The task it should solve e.g. is given one conformation for a small molecule, compare it to a large database of conformations and calculate RMSD. Optimally the mole ...
small written 7.3 years ago by Nir London220 • updated 7.3 years ago by Egon Willighagen5.2k
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Comment: C: Which Downloadable Database Of Pdb Ligand Binding Sites Would You Recommend?
... Can't you perform an 'advanced' query and batch download the results? ...
written 8.1 years ago by Nir London220
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Answer: A: How Do You Log Details Of Data Processing/ Pipelines / In Silico Analyses Perfor
... Don't you just >& log and email it ? ...
written 8.1 years ago by Nir London220
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Answer: A: What In Your Opinion Is The Best Tool For Protein Function Prediction?
... A review from 2 years ago (though probably still considered recent) offers ~40 tools for function prediction categorized by different approaches. Trends Biotechnol. 2009 Apr;27(4):210-9. Epub 2009 Feb 27. Protein function prediction--the power of multiplicity. Rentzsch R, Orengo CA. Also, join the ...
written 8.1 years ago by Nir London220
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Answer: A: Your Favorite Bioinformatics Blogs (March 2010)
... As WoA Nicely put: the Macromolecular Modeling Blog other related blogs I read (but don't write at): sort of ranked by relevance to structural bioinformatics: Trapped in the USA Discount Thoughts Byte Size Biology In the Pipeline Mike's Spacetime The Curious Wavefunction Public Rambling Circle of ...
written 8.1 years ago by Nir London220
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Answer: A: Pdb File Of Drug
... If I understand correctly, surendra, you managed to convert to PDB but failed to view it in Discovery Studio? Perhaps try to convert it to a mol2 file (if it's not already the native format) and that would go through better. ...
written 8.1 years ago by Nir London220
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Answer: A: Important Residues For Protein-Protein Binding
... For another list of protein binding site (interface) prediction servers (partially overlapping) check-out: http://rosettadesigngroup.com/blog/58/10-protein-protein-interface-prediction-servers/ ...
written 8.1 years ago by Nir London220
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Answer: A: Mapping The Specificity Of Gpcrs To G-Proteins
... You might find something usefull here: http://rosettadesigngroup.com/blog/138/gpcr-resources/ ...
written 8.6 years ago by Nir London220

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