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Comment: Comment: cnvkit Error message "length of weights should be the same as the number of prob
12 days ago by Ömer An ▴ 260
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9.8k
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Answer: Answer: What Is The Meaning Of Snp Strand
3 months ago by Ömer An ▴ 260
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15k
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Answer: Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
3 months ago by Ömer An ▴ 260
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13k
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Comment: Comment: MAF vs VAF
5 months ago by Ömer An ▴ 260
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40k
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Answer: Answer: Converting a VCF with SNPs and indels to BED format
17 months ago by Ömer An ▴ 260
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6.1k
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Answer: Answer: Extract UMIs using UMI-tools
21 months ago by Ömer An ▴ 260
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6.9k
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6 follow
How to access GeneCards via XML?
GeneCards XML
updated 2.6 years ago by ★ 9.5k • written 10.3 years ago by ▴ 260
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55k
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Comment: Comment: How to extract sample id using bcftools or vcftools
3.1 years ago by Ömer An ▴ 260
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32k
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Comment: C: Batch correction in DESeq2
3.7 years ago by Ömer An ▴ 260
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107k
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Comment: C: How to plot coverage and depth statistics of a bam file
4.0 years ago by Ömer An ▴ 260
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5.4k
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Comment: C: CellRanger Make Counts Expected Cells
4.1 years ago by Ömer An ▴ 260
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12k
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Comment: C: correcting for a batch in DESeq2
4.2 years ago by Ömer An ▴ 260
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12k
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Comment: C: STAR or Bowtie for small RNA seq?
4.3 years ago by Ömer An ▴ 260
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1
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4.9k
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Comment: C: best STAR options for miRNA mapping?
4.3 years ago by Ömer An ▴ 260
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5.6k
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Comment: C: Cellranger count fails at mapping
4.4 years ago by Ömer An ▴ 260
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1
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5.9k
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Answer: A: software of single-cell RNA-seq from fastq or fasta
4.4 years ago by Ömer An ▴ 260
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1
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14k
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Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
4.6 years ago by Ömer An ▴ 260
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4.9k
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Comment: A: How to analyze the RNAseq paired samples with DESeq2?
4.6 years ago by Ömer An ▴ 260
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9.5k
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Answer: A: input for rMATS
4.7 years ago by Ömer An ▴ 260
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8.6k
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Answer: A: How to merge multiple single cell sequencing data after processing by CellRanger
4.7 years ago by Ömer An ▴ 260
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52k
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Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.7 years ago by Ömer An ▴ 260
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1.3k
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Answer: A: RNAfold with batch constraints
4.8 years ago by Ömer An ▴ 260
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13k
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Answer: A: How to install gdc-client in Ubnutu
4.8 years ago by Ömer An ▴ 260
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1.4k
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Comment: C: Find 12-mer not mapping to the human genome
4.9 years ago by Ömer An ▴ 260
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9.5k
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Comment: C: input for rMATS
5.3 years ago by Ömer An ▴ 260
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9.5k
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Comment: C: input for rMATS
5.3 years ago by Ömer An ▴ 260
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1
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9.5k
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Comment: C: input for rMATS
5.3 years ago by Ömer An ▴ 260
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13k
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Comment: C: How many genes to include for a GSEA analysis
5.3 years ago by Ömer An ▴ 260
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1
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3.4k
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Comment: C: DESeq2: unable to allocate memory error
5.4 years ago by Ömer An ▴ 260
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4.8k
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Answer: A: TCGA BRCA sample_type blood derived normal?
5.6 years ago by Ömer An ▴ 260
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5.0k
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Comment: C: Getting error in running rMATS
5.8 years ago by Ömer An ▴ 260
5
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1
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55k
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Answer: A: how to extract sample id with bcftools or vcftools
updated 5.8 years ago by 12k • written 6.5 years ago by ▴ 260
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9.0k
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Comment: Comment: Splicing factor database
updated 2.0 years ago by 44k • written 6.0 years ago by ▴ 260
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1
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2.6k
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circRNA-Seq analysis tools
circRNA-Seq circrna
updated 6.0 years ago by ▴ 770 • written 6.1 years ago by ▴ 260
2
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3
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1.4k
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Find 12-mer not mapping to the human genome
mapping alignment sequencing sequence
updated 6.0 years ago by 11k • written 6.0 years ago by ▴ 260
1
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0
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70k
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Comment: C: VCF files: Change Chromosome Notation
6.1 years ago by Ömer An ▴ 260
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2
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66k
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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
6.4 years ago by Ömer An ▴ 260
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0
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2.8k
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Answer: A: Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
6.5 years ago by Ömer An ▴ 260
1
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0
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19k
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Answer: A: Software For Hla Typing Using Ngs?
6.5 years ago by Ömer An ▴ 260
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0
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24k
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Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
6.6 years ago by Ömer An ▴ 260
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0
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5.1k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.7 years ago by Ömer An ▴ 260
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1
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5.1k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.7 years ago by Ömer An ▴ 260
0
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0
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56k
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Comment: C: How To Download All Sra Samples At Once ?
7.0 years ago by Ömer An ▴ 260
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0
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30k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.3 years ago by Ömer An ▴ 260
2
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1
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4.3k
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Homozygous/Heterozygous Deletions (Copy Number Variation) in TCGA
cnv TCGA
updated 7.5 years ago by • 0 • written 10.3 years ago by ▴ 260
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15k
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Comment: C: FastQ quality check : what can we correct ?
7.8 years ago by Ömer An ▴ 260
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0
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11k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
8.0 years ago by Ömer An ▴ 260
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0
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99k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.3 years ago by Ömer An ▴ 260
1
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0
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2.1k
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How to get strand-specific nucleotide change annotation in ANNOVAR?
ANNOVAR
8.5 years ago by Ömer An ▴ 260
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1
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3.7k
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Comment: C: How to identify non-expressed genes in microarray?
8.9 years ago by Ömer An ▴ 260
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