User: emilyprice16

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Posts by emilyprice16

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Comment: C: Comparing peaks between multiple samples
... That is just what I am after! I have looked through the DiffBind reference manual and can follow how to do this. I have another question after reading through it though - in section 6.3 it demonstrates how you can identify sites that are unique to a sample group. In that example resistant vs respons ...
written 4 weeks ago by emilyprice160
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Comparing peaks between multiple samples
... I have a set of ChIP-seq peaks for 4 samples. I want to create one file in which the intersected genomic peaks are listed along with how many out of the 4 samples it appeared. I would also like the genomic region of the intersect over multiple samples to have the lowest start and highest end coordin ...
bedtools chip-seq written 5 weeks ago by emilyprice160 • updated 27 days ago by Rory Stark790
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Log2 fold change correlation for ChIP seq data - do I need a FDR cut off?
... I have ChIP-seq differential binding data for two transcription factors and a histone modification. I want to see if the change in TF binding/histone modification between timepoints are correlated with each other. Therefore I am going to correlate the log2 fold change for each factor. However do I n ...
chip-seq written 4 months ago by emilyprice160

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