User: hansyuhans

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hansyuhans0
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Posts by hansyuhans

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Comment: C: File Format For Storing Annotations For Both Organism And Sequence?
... Thanks for answering! I would have no problem storing SNPs in GFF3 file but is there an accepted method for storing organism information in GFF3 as well? I understand that each line in GFF3 identifies a chromosome (or another form of sequence) for which the annotation is for, but properties of an or ...
written 6.3 years ago by hansyuhans0
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File Format For Storing Annotations For Both Organism And Sequence?
... Hello, Is there a file format that allows me to store properties of an organism and its sequence annotations (namely SNPs)? Can I do it with GFF3? Or is GFF3 only for sequence annotations? So for example (hypothetically), the file would contain information about the organism's color, average size ...
format written 6.3 years ago by hansyuhans0 • updated 9 days ago by Biostar ♦♦ 20
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Storing Snp Data In Gff3 Format And Loading Into Chado
... Hi, I'm trying to load SNP data into a Chado database by storing them in GFF3 format and then running the gmodbulkload_gff3.pl script to get them into Chado. I'd like to have the reference and alternative bases loaded with each SNP. Which tags should I use to store this information in the GFF3 fil ...
gff3 snp written 6.5 years ago by hansyuhans0 • updated 6.5 years ago by cain.cshl60

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