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1
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1
reply
715
views
DGE adjusted p-value
cell single p-value stats
updated 2.1 years ago by 14k • written 2.1 years ago by ▴ 80
1
vote
1
reply
598
views
Ligand Receptor Interaction Algorithm
cell single CCI
updated 2.2 years ago by ▴ 190 • written 2.2 years ago by ▴ 80
0
votes
0
replies
329
views
Finding Shared Patterns Between Patients with Commonality
Modeling Statistical Statistics
2.2 years ago by fouerghi20 ▴ 80
0
votes
0
replies
346
views
Database for Cell Lines' IFNbeta production
Database
2.5 years ago by fouerghi20 ▴ 80
1
vote
1
reply
982
views
Analyzing TCRseq Data
tcr TCRseq scRepetoire Immunarch
updated 2.7 years ago by ▴ 240 • written 3.1 years ago by ▴ 80
0
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0
replies
921
views
Comment: Comment: Gene Regulatory Networks on Single Cell RNAseq Datasets
2.8 years ago by fouerghi20 ▴ 80
0
votes
0
replies
697
views
Comment: Comment: Detecting RNA Editing in Single-Cell RNA-seq
2.8 years ago by fouerghi20 ▴ 80
2
votes
2
replies
697
views
Detecting RNA Editing in Single-Cell RNA-seq
scRNAseq RNAediting
2.8 years ago by fouerghi20 ▴ 80
2
votes
2
replies
921
views
Gene Regulatory Networks on Single Cell RNAseq Datasets
GRN Transcription scRNAseq ChIPseq Factors
2.8 years ago by fouerghi20 ▴ 80
0
votes
0
replies
406
views
Batch Effects in Multiplexed Perturbations
demultiplexing cellhashing singlecell scRNAseq
2.9 years ago by fouerghi20 ▴ 80
0
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0
replies
1.5k
views
Comment: C: Creating HTO Count Matrix for Demultiplexing
3.1 years ago by fouerghi20 ▴ 80
0
votes
3
replies
1.5k
views
Creating HTO Count Matrix for Demultiplexing
single cell cell hashing cite seq
updated 3.1 years ago by ▴ 10 • written 3.2 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Demultiplexing/ separating multiple hashtags in multi-modal sc-seq
3.2 years ago by fouerghi20 ▴ 80
0
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0
replies
1.5k
views
Comment: C: Creating HTO Count Matrix for Demultiplexing
3.2 years ago by fouerghi20 ▴ 80
2
votes
6
replies
3.7k
views
Algorithm to remove batch effects
single-cell batch-effect RNA-Seq
updated 7 days ago by 43k • written 3.3 years ago by ▴ 80
3
votes
1
reply
6.2k
views
Normalization before or after merging the samples in Seurat
single-cell seurat batch-effect
updated 7 days ago by 43k • written 3.3 years ago by ▴ 80
0
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0
replies
3.3k
views
Comment: C: Is it worth it to explore outside of Seurat?
3.3 years ago by fouerghi20 ▴ 80
14
votes
5
replies
3.3k
views
Is it worth it to explore outside of Seurat?
single cell seurat
updated 2.7 years ago by ▴ 60 • written 3.3 years ago by ▴ 80
1
vote
2
replies
3.2k
views
Duplicated row names on Seurat
CCLE Seurat scRNAseq single cell
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 80
0
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0
replies
4.0k
views
Answer: A: Labeling Clusters in ggplot
3.3 years ago by fouerghi20 ▴ 80
0
votes
5
replies
4.0k
views
Labeling Clusters in ggplot
ggplot single cell
updated 2.4 years ago by • 0 • written 3.3 years ago by ▴ 80
0
votes
0
replies
908
views
FeaturePlot on a KDE Plot/density plot
single cell seurat r RNA-Seq
3.3 years ago by fouerghi20 ▴ 80
0
votes
0
replies
748
views
Error when running ssGSEA
GSEA ssGSEA gene enrichment
3.4 years ago by fouerghi20 ▴ 80
0
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0
replies
3.2k
views
Comment: C: Duplicated row names on Seurat
3.4 years ago by fouerghi20 ▴ 80
0
votes
0
replies
1.2k
views
Comment: C: Seurat Integration Post-Normalization and Cluster Identification or Pre those St
3.5 years ago by fouerghi20 ▴ 80
0
votes
0
replies
5.5k
views
Comment: C: Finding Subclusters in Seurat Clusters
3.5 years ago by fouerghi20 ▴ 80
0
votes
1
reply
1.2k
views
Seurat Integration Post-Normalization and Cluster Identification or Pre those Steps
single cell seurat integration
3.5 years ago by fouerghi20 ▴ 80
10
votes
5
replies
5.5k
views
Finding Subclusters in Seurat Clusters
seurat scRNAseq cluster subcluster
updated 2.5 years ago by ▴ 190 • written 3.5 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: PHATE Clustering Error
3.6 years ago by fouerghi20 ▴ 80
0
votes
1
reply
1.5k
views
Comment: C: PHATE Clustering Error
3.6 years ago by fouerghi20 ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: PHATE Clustering Error
3.6 years ago by fouerghi20 ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: PHATE Clustering Error
updated 3.6 years ago by 141k • written 3.6 years ago by ▴ 80
0
votes
10
replies
1.5k
views
PHATE Clustering Error
PHATE scRNA-seq single cell seurat error
updated 3.6 years ago by 141k • written 3.6 years ago by ▴ 80
0
votes
2
replies
1.5k
views
Comment: C: PHATE Clustering Error
3.6 years ago by fouerghi20 ▴ 80
0
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2
replies
1.5k
views
Comment: A: PHATE Clustering Error
3.6 years ago by fouerghi20 ▴ 80
0
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1
reply
3.0k
views
Comment: C: Running PHATE on Seurat Object
3.6 years ago by fouerghi20 ▴ 80
2
votes
3
replies
3.0k
views
Running PHATE on Seurat Object
scRNAseq seurat PHATE
updated 3.6 years ago by ★ 16k • written 3.6 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: BCL2FASTQ2 Pipeline Errors
3.8 years ago by fouerghi20 ▴ 80
3
votes
3
replies
1.3k
views
BCL2FASTQ2 Pipeline Errors
RNA-Seq FASTQ BCL Illumina
updated 3.8 years ago by 16k • written 3.8 years ago by ▴ 80
2
votes
1
reply
1.4k
views
Generating A Heatmap for specific samples.
RNA-Seq DESeq2 Heatmap
updated 3.9 years ago by ▴ 30 • written 3.9 years ago by ▴ 80
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