Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
310
views
Does it make sense to do hdWGCNA following the DEG analysis?
DEG WGCNA single-cell
updated 5 months ago by • 0 • written 5 months ago by ▴ 90
0
votes
1
reply
489
views
what is the best way to build my design model with DESeq2
design-model DESeq2 single-cell
updated 12 months ago by 4.5k • written 12 months ago by ▴ 90
0
votes
0
replies
563
views
Why in Heatmap plot my case and control samples of single cell dataset are not well clustered?
DESeq2 single-cell Heatmap
updated 18 months ago by 44k • written 18 months ago by ▴ 90
0
votes
0
replies
525
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single integration cell DEG design analysis
21 months ago by paria ▴ 90
3
votes
4
replies
1.6k
views
Why my single cell cluster is splitted?
clustering single-cell
updated 21 months ago by ★ 28k • written 21 months ago by ▴ 90
0
votes
0
replies
1.6k
views
Comment: Comment: Why my single cell cluster is splitted?
21 months ago by paria ▴ 90
0
votes
2
replies
772
views
If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 21 months ago by ★ 18k • written 21 months ago by ▴ 90
0
votes
0
replies
885
views
Comment: Comment: Should I necessarily use cluster evaluation tools for my single cell dataset?
21 months ago by paria ▴ 90
2
votes
2
replies
885
views
Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell cluster-evaluation scclusteval
21 months ago by paria ▴ 90
0
votes
0
replies
1.4k
views
Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
21 months ago by paria ▴ 90
0
votes
1
reply
1.4k
views
Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
21 months ago by paria ▴ 90
0
votes
0
replies
687
views
integration using rPCA with reference or without it?
integration Seurat rPCA Single-cell
21 months ago by paria ▴ 90
0
votes
1
reply
2.0k
views
Comment: Comment: How to convert Seurat object to sce object retaining the HVG
22 months ago by paria ▴ 90
2
votes
4
replies
2.0k
views
How to convert Seurat object to sce object retaining the HVG
HVG single-cell SingleCellExperiment seurat
updated 15 months ago by 3.3k • written 22 months ago by ▴ 90
1
vote
1
reply
1.3k
views
singleR annotation shows overlapping clusters
single cluster cell annotation singleR Seurat
updated 22 months ago by ★ 18k • written 22 months ago by ▴ 90
0
votes
0
replies
2.4k
views
Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
22 months ago by paria ▴ 90
0
votes
1
reply
2.4k
views
Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
22 months ago by paria ▴ 90
3
votes
3
replies
2.4k
views
What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID RNA-seq R singleR
22 months ago by paria ▴ 90
0
votes
1
reply
2.2k
views
Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.1 years ago by paria ▴ 90
0
votes
0
replies
3.0k
views
Comment: Comment: How to make a Dotplot like this in R for my clustered single cell data set
2.1 years ago by paria ▴ 90
0
votes
2
replies
3.0k
views
How to make a Dotplot like this in R for my clustered single cell data set
data single DotPlot cell
2.1 years ago by paria ▴ 90
0
votes
0
replies
2.2k
views
Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.1 years ago by paria ▴ 90
1
vote
5
replies
2.2k
views
How do I know if I'm overcorrecting my single cell data
Rpca sn-RNA overcorrection seq seurat CCA
updated 2.1 years ago by ★ 18k • written 2.1 years ago by ▴ 90
2
votes
2
replies
2.7k
views
How should I solve the error: comparison (3) is possible only for atomic and list types
single ScaleData cell rpca analysis
updated 2.1 years ago by 148k • written 2.1 years ago by ▴ 90
0
votes
0
replies
696
views
Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
2.1 years ago by paria ▴ 90
0
votes
2
replies
696
views
Does chemistry have significant effects on my single nucleus dataset?
single-nucleus chemistry dataset
2.1 years ago by paria ▴ 90
1
vote
4
replies
1.4k
views
Single cell cluster evaluation does not output reasonable number of stable clusters
RNA scclusteval single-cell integration harmony sequencing
21 months ago by paria ▴ 90
0
votes
1
reply
1.6k
views
Comment: Comment: How do I know the SNPS which are removed when clumping are in a LD block or SNPs
updated 3.1 years ago by 88k • written 3.1 years ago by ▴ 90
0
votes
3
replies
1.6k
views
How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization data clumping Mendelian GWAS
updated 3.1 years ago by 88k • written 3.1 years ago by ▴ 90
1
vote
3
replies
962
views
How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 90
0
votes
1
reply
962
views
Comment: Comment: How to process batches to be able to correct for its effect
3.3 years ago by paria ▴ 90
0
votes
0
replies
614
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
3.4 years ago by paria ▴ 90
0
votes
0
replies
8.3k
views
Answer: Answer: Low Fraction Reads in Cells (Cellranger Count Pipeline)
3.5 years ago by paria ▴ 90
0
votes
0
replies
745
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
3.5 years ago by paria ▴ 90
0
votes
0
replies
1.3k
views
Comment: Comment: Cell composition in each condition of single cell data
3.7 years ago by paria ▴ 90
0
votes
0
replies
1.3k
views
Comment: Comment: Cell composition in each condition of single cell data
3.7 years ago by paria ▴ 90
0
votes
3
replies
1.3k
views
Cell composition in each condition of single cell data
cell composition single-cell scProportionTest
3.7 years ago by paria ▴ 90
0
votes
1
reply
13k
views
Comment: Comment: correct way of analyzing cell proportions in singlecell data
3.7 years ago by paria ▴ 90
0
votes
0
replies
6.1k
views
Comment: C: regressing out covariate from Seurat integrated data
3.8 years ago by paria ▴ 90
6
votes
9
replies
6.1k
views
regressing out covariate from Seurat integrated data
single-cell seurat
updated 2.9 years ago by ▴ 10 • written 3.8 years ago by ▴ 90
0
votes
0
replies
6.1k
views
Comment: A: regressing out covariate from Seurat integrated data
3.8 years ago by paria ▴ 90
0
votes
0
replies
6.1k
views
Comment: C: regressing out covariate from Seurat integrated data
3.8 years ago by paria ▴ 90
0
votes
0
replies
738
views
Integration or not?
single-cell RNA sequencing seurat integration
3.8 years ago by paria ▴ 90
0
votes
0
replies
2.2k
views
Comment: C: Unused argument in R
3.8 years ago by paria ▴ 90
4
votes
8
replies
2.2k
views
Unused argument in R
R
3.8 years ago by paria ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: How to regress out variants using SCTransform function?
3.8 years ago by paria ▴ 90
0
votes
1
reply
3.4k
views
Comment: C: How to regress out variants using SCTransform function?
3.8 years ago by paria ▴ 90
0
votes
1
reply
3.4k
views
Comment: C: How to regress out variants using SCTransform function?
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 90
0
votes
1
reply
3.4k
views
Comment: C: How to regress out variants using SCTransform function?
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 90
2
votes
7
replies
3.4k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing SCTransform Seurat
3.8 years ago by paria ▴ 90
57 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6