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Comment: Comment: How do I know the SNPS which are removed when clumping are in a LD block or SNPs
updated 9 months ago by 82k • written 9 months ago by ▴ 70
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How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization data clumping Mendelian GWAS
updated 9 months ago by 82k • written 9 months ago by ▴ 70
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3
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433
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How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 11 months ago by 9.4k • written 11 months ago by ▴ 70
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433
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Comment: Comment: How to process batches to be able to correct for its effect
11 months ago by paria.alipour ▴ 70
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300
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Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
13 months ago by paria.alipour ▴ 70
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2.6k
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Answer: Answer: Low Fraction Reads in Cells (Cellranger Count Pipeline)
14 months ago by paria.alipour ▴ 70
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367
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How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
14 months ago by paria.alipour ▴ 70
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0
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690
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Comment: Comment: Cell composition in each condition of single cell data
16 months ago by paria.alipour ▴ 70
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690
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Comment: Comment: Cell composition in each condition of single cell data
16 months ago by paria.alipour ▴ 70
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3
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690
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Cell composition in each condition of single cell data
cell composition single-cell scProportionTest
16 months ago by paria.alipour ▴ 70
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5.1k
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Comment: Comment: correct way of analyzing cell proportions in singlecell data
16 months ago by paria.alipour ▴ 70
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2.3k
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Comment: C: regressing out covariate from Seurat integrated data
17 months ago by paria.alipour ▴ 70
6
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9
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2.3k
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regressing out covariate from Seurat integrated data
single-cell seurat
updated 7 months ago by ▴ 10 • written 17 months ago by ▴ 70
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2.3k
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Comment: A: regressing out covariate from Seurat integrated data
17 months ago by paria.alipour ▴ 70
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2.3k
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Comment: C: regressing out covariate from Seurat integrated data
17 months ago by paria.alipour ▴ 70
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456
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Integration or not?
single-cell RNA sequencing seurat integration
17 months ago by paria.alipour ▴ 70
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955
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Comment: C: Unused argument in R
18 months ago by paria.alipour ▴ 70
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8
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955
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Unused argument in R
R
18 months ago by paria.alipour ▴ 70
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1.4k
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Comment: C: How to regress out variants using SCTransform function?
18 months ago by paria.alipour ▴ 70
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1
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1.4k
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Comment: C: How to regress out variants using SCTransform function?
18 months ago by paria.alipour ▴ 70
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1.4k
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Comment: C: How to regress out variants using SCTransform function?
updated 18 months ago by 9.4k • written 18 months ago by ▴ 70
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1.4k
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Comment: C: How to regress out variants using SCTransform function?
updated 18 months ago by 9.4k • written 18 months ago by ▴ 70
2
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7
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1.4k
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How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing SCTransform Seurat
18 months ago by paria.alipour ▴ 70
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400
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single-nuclei 10X genomics sequencing metrics
RNA-Seq sequence
20 months ago by paria.alipour ▴ 70
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0
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601
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Integration of 10X genomics single-nuclei RNA seq datasets
RNA-Seq R sequencing
updated 22 months ago by 20 • written 23 months ago by ▴ 70
1
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1
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955
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Answer: A: Unused argument in R
23 months ago by paria.alipour ▴ 70
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2.7k
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Comment: C: single-nuclei 10X genomics
23 months ago by paria.alipour ▴ 70
7
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2
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2.7k
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single-nuclei 10X genomics
RNA-Seq R
updated 23 months ago by ★ 13k • written 23 months ago by ▴ 70
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2
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1.1k
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Comment: A: Best package to cluster a single cell dataset using marker gene lists retrieved
23 months ago by paria.alipour ▴ 70
1
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1.7k
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Comment: C: Gene list of Neuronal Markers for TSNE plot
2.2 years ago by paria.alipour ▴ 70
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