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Does it make sense to do hdWGCNA following the DEG analysis?
DEG WGCNA single-cell
updated 3 months ago by • 0 • written 3 months ago by ▴ 90
0
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1
reply
464
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what is the best way to build my design model with DESeq2
design-model DESeq2 single-cell
updated 9 months ago by 4.5k • written 10 months ago by ▴ 90
0
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0
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537
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Why in Heatmap plot my case and control samples of single cell dataset are not well clustered?
DESeq2 single-cell Heatmap
updated 16 months ago by 44k • written 16 months ago by ▴ 90
0
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0
replies
499
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single integration cell DEG design analysis
19 months ago by paria ▴ 90
3
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4
replies
1.4k
views
Why my single cell cluster is splitted?
clustering single-cell
updated 19 months ago by ★ 28k • written 19 months ago by ▴ 90
0
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2
replies
721
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If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 19 months ago by ★ 17k • written 19 months ago by ▴ 90
2
votes
2
replies
849
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Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell cluster-evaluation scclusteval
19 months ago by paria ▴ 90
0
votes
0
replies
652
views
integration using rPCA with reference or without it?
integration Seurat rPCA Single-cell
19 months ago by paria ▴ 90
2
votes
4
replies
1.9k
views
How to convert Seurat object to sce object retaining the HVG
HVG single-cell SingleCellExperiment seurat
updated 13 months ago by 3.2k • written 20 months ago by ▴ 90
1
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1
reply
1.2k
views
singleR annotation shows overlapping clusters
single cluster cell annotation singleR Seurat
updated 20 months ago by ★ 17k • written 20 months ago by ▴ 90
3
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3
replies
2.3k
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What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID RNA-seq R singleR
20 months ago by paria ▴ 90
0
votes
2
replies
2.8k
views
How to make a Dotplot like this in R for my clustered single cell data set
data single DotPlot cell
23 months ago by paria ▴ 90
1
vote
5
replies
2.1k
views
How do I know if I'm overcorrecting my single cell data
Rpca sn-RNA overcorrection seq seurat CCA
updated 22 months ago by ★ 17k • written 23 months ago by ▴ 90
2
votes
2
replies
2.6k
views
How should I solve the error: comparison (3) is possible only for atomic and list types
single ScaleData cell rpca analysis
updated 23 months ago by 146k • written 23 months ago by ▴ 90
0
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2
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659
views
Does chemistry have significant effects on my single nucleus dataset?
single-nucleus chemistry dataset
23 months ago by paria ▴ 90
1
vote
4
replies
1.3k
views
Single cell cluster evaluation does not output reasonable number of stable clusters
RNA scclusteval single-cell integration harmony sequencing
19 months ago by paria ▴ 90
0
votes
3
replies
1.6k
views
How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization data clumping Mendelian GWAS
updated 3.0 years ago by 88k • written 3.0 years ago by ▴ 90
1
vote
3
replies
920
views
How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 3.1 years ago by 13k • written 3.1 years ago by ▴ 90
0
votes
0
replies
597
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
3.3 years ago by paria ▴ 90
0
votes
0
replies
725
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
3.4 years ago by paria ▴ 90
0
votes
3
replies
1.2k
views
Cell composition in each condition of single cell data
cell composition single-cell scProportionTest
3.5 years ago by paria ▴ 90
6
votes
9
replies
5.8k
views
regressing out covariate from Seurat integrated data
single-cell seurat
updated 2.7 years ago by ▴ 10 • written 3.6 years ago by ▴ 90
0
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0
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716
views
Integration or not?
single-cell RNA sequencing seurat integration
3.6 years ago by paria ▴ 90
4
votes
8
replies
2.1k
views
Unused argument in R
R
3.7 years ago by paria ▴ 90
2
votes
7
replies
3.3k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing SCTransform Seurat
3.7 years ago by paria ▴ 90
0
votes
0
replies
668
views
single-nuclei 10X genomics sequencing metrics
RNA-Seq sequence
3.9 years ago by paria ▴ 90
0
votes
0
replies
863
views
Integration of 10X genomics single-nuclei RNA seq datasets
RNA-Seq R sequencing
updated 4.0 years ago by 20 • written 4.1 years ago by ▴ 90
10
votes
2
replies
3.9k
views
single-nuclei 10X genomics
RNA-Seq R
updated 4.1 years ago by ★ 17k • written 4.1 years ago by ▴ 90
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