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Posts by mar77
How can I filter RNA-seq reads to remove reads where more than 50% of the read is low quality (Q<20)?
... I'm trying to filter out any reads that consist of more than 50% low quality reads (Q<20). I've already performed filtering steps to remove adapter contamination and remove reads with more than 10% unknown reads, both using cutadapt. Can anyone recommend a tool to use to perform this filtering st ...
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