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136
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NA values showing at duplicacy removal step
Microarray RNA-Seq
18 days ago by prithvi.mastermind ▴ 50
0
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0
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339
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How to match identifier to identifier in order to make a relationship in neo4j?
R neo4j pathway
4 months ago by prithvi.mastermind ▴ 50
0
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0
replies
220
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How can I pass multiple GO-BP terms in neo4j to make a network with a single subtype?
R neo4j pathway
4 months ago by prithvi.mastermind ▴ 50
0
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2
replies
1.3k
views
How to run Aracne cytoscape plugin ?
R rna-seq cytoscape
updated 4 months ago by ▴ 280 • written 3.6 years ago by ▴ 50
0
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1
reply
619
views
How to interpret LASSO results for creating gene signature ?
Microarray KM OS plot
updated 10 months ago by • 0 • written 13 months ago by ▴ 50
1
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1
reply
580
views
Error while running survival analysis ?
KM OS plot RNA-Seq
updated 14 months ago by ▴ 370 • written 14 months ago by ▴ 50
12
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6
replies
942
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6 follow
What does PCA results signify?
RNA-Seq PCA
updated 17 months ago by 14k • written 17 months ago by ▴ 50
0
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1
reply
451
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Why do I get lines of 2 different colors in the mfuzz clustering analysis?
clustering RNA-Seq
updated 17 months ago by ★ 2.0k • written 17 months ago by ▴ 50
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0
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1.3k
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Comment: Comment: Memory allocation code while running Seurat ?
17 months ago by prithvi.mastermind ▴ 50
0
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2
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1.3k
views
Memory allocation code while running Seurat ?
Single cell analysis
updated 17 months ago by ★ 1.8k • written 17 months ago by ▴ 50
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1
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715
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Comment: Comment: How to control width of my boxplots?
17 months ago by prithvi.mastermind ▴ 50
2
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3
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715
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How to control width of my boxplots?
RNA-Seq Boxplot
updated 17 months ago by 43k • written 17 months ago by ▴ 50
0
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1
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509
views
How to interpret KM graph?
KM OS plot RNA-Seq
updated 17 months ago by 27k • written 17 months ago by ▴ 50
0
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0
replies
265
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Is the use of 1.96 as a threshold suitable for KM analysis?
RNA-Seq Survival
17 months ago by prithvi.mastermind ▴ 50
0
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0
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348
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Why I'm not getting KM plots at a significant p-value?
KM OS plot RNA-Seq
18 months ago by prithvi.mastermind ▴ 50
0
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1
reply
679
views
How to choose value of m and c in mfuzz ?
clustering RNA-Seq Normalization soft
updated 18 months ago by 6.2k • written 18 months ago by ▴ 50
0
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0
replies
1.1k
views
Comment: Comment: How to apply two tailed paired t-test in limma for DEGs selection?
18 months ago by prithvi.mastermind ▴ 50
1
vote
6
replies
1.2k
views
6 follow
How to perform paired t-test in R for obtaining p-value of each gene?
p-value RNA-Seq z-score t-test
updated 16 months ago by 43k • written 18 months ago by ▴ 50
1
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5
replies
1.1k
views
How to apply two tailed paired t-test in limma for DEGs selection?
Limma Design paired matrix Microarray t-test
18 months ago by prithvi.mastermind ▴ 50
0
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1
reply
1.2k
views
Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
18 months ago by prithvi.mastermind ▴ 50
0
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1
reply
1.3k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
18 months ago by prithvi.mastermind ▴ 50
2
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6
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1.3k
views
Why I get error while performing DeSeq2 ?
DeSeq2 RNA-Seq Normalization
updated 18 months ago by 14k • written 18 months ago by ▴ 50
0
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1
reply
1.3k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
18 months ago by prithvi.mastermind ▴ 50
0
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1
reply
477
views
Error while running Limma
Microarray Limma Design matrix
updated 18 months ago by ★ 1.8k • written 19 months ago by ▴ 50
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0
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724
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
19 months ago by prithvi.mastermind ▴ 50
1
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3
replies
724
views
What is the best way to pre-process RNA-Seq data?
RNA-Seq z-score Normalization
updated 19 months ago by 43k • written 19 months ago by ▴ 50
0
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1
reply
393
views
At what step should I perform batch correction?
RNA-Seq Batch Correction Microarray
updated 19 months ago by 82k • written 19 months ago by ▴ 50
0
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0
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275
views
How can I amalgamate both co-expression and survival data to find highly co-expressed modules ?
hazard cox R module co-expression propotional
2.1 years ago by prithvi.mastermind ▴ 50
0
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1
reply
647
views
How many minimum number of samples are allowed for DEGs identication in microarray dataset?
Limma DEGs Microarray
updated 2.4 years ago by ★ 1.5k • written 2.4 years ago by ▴ 50
5
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5
replies
2.5k
views
How to draw a Sankey plot with colored links?
R software error
updated 2.5 years ago by ▴ 60 • written 3.4 years ago by ▴ 50
0
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0
replies
689
views
How to use pamr function in R?
R software error
updated 3.3 years ago by 43k • written 3.3 years ago by ▴ 50
1
vote
2
replies
1.1k
views
How to map Affymetrix IDs to Gene Symbols using hgu133a.db R package?
R software error
updated 2.8 years ago by ▴ 20 • written 3.3 years ago by ▴ 50
1
vote
4
replies
1.4k
views
How to increase font size in Funnel plot labels?
R software error
updated 3.3 years ago by ★ 2.5k • written 3.4 years ago by ▴ 50
0
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0
replies
1.4k
views
Comment: C: How to increase font size in Funnel plot labels?
3.4 years ago by prithvi.mastermind ▴ 50
0
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1
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1.2k
views
Comment: C: How to draw a funnel plot in R using Plot_ly function?
3.4 years ago by prithvi.mastermind ▴ 50
0
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0
replies
2.5k
views
Comment: C: How to draw a Sankey plot with colored links?
3.4 years ago by prithvi.mastermind ▴ 50
1
vote
3
replies
1.2k
views
How to draw a funnel plot in R using Plot_ly function?
R software error
updated 3.4 years ago by ★ 2.5k • written 3.4 years ago by ▴ 50
1
vote
2
replies
2.5k
views
Comment: C: How to draw a Sankey plot with colored links?
3.4 years ago by prithvi.mastermind ▴ 50
0
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0
replies
567
views
Pathifier Results not fully reproducible across TCGA and METABRIC
R software error rna-seq
3.5 years ago by prithvi.mastermind ▴ 50
0
votes
0
replies
533
views
Training and Testing datasets classification?
R gene software error
updated 3.6 years ago by 20 • written 3.8 years ago by ▴ 50
0
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1
reply
875
views
UCSC Xena Probe to Gene mapping
RNA-Seq gene software error R next-gen
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 50
1
vote
2
replies
1.7k
views
How to Normalize and log tranform the miRNA Seq data using DeSeQ2 / EdgeR?
R rna-seq software error
updated 3.7 years ago by ★ 7.0k • written 3.7 years ago by ▴ 50
0
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1
reply
3.7k
views
Comment: C: How to compute Spearman correlation between numeric and non-numeric data variabl
3.7 years ago by prithvi.mastermind ▴ 50
0
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4
replies
3.7k
views
How to compute Spearman correlation between numeric and non-numeric data variables ?
R genome gene
updated 3.8 years ago by ★ 5.8k • written 3.8 years ago by ▴ 50
2
votes
2
replies
1.3k
views
How to calculate Spearman correlation coefficient and p-values between numeric and non-numeric data variables?
R software error gene
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 50
1
vote
2
replies
1.4k
views
Ensembl ID mapping using Biomart
RNA-Seq R software error gene
updated 3.8 years ago by 27k • written 3.8 years ago by ▴ 50
0
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1
reply
1.8k
views
Comment: C: DESeq2 Batch correction enquiry?
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 50
0
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0
replies
1.8k
views
Comment: C: DESeq2 Batch correction enquiry?
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 50
0
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1
reply
1.8k
views
Comment: C: DESeq2 Batch correction enquiry?
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 50
0
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1
reply
1.8k
views
Comment: C: DESeq2 Batch correction enquiry?
3.8 years ago by prithvi.mastermind ▴ 50
54 results • Page 1 of 2
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