User: dott.difranco

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Posts by dott.difranco

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Comment: C: Problem to start Breakdancer
... Thanks a lot RamRS. Nice day ...
written 4 weeks ago by dott.difranco0
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Comment: C: Problem to start Breakdancer
... By "my genome" I meant the genome I need to test. My professor gave me this task and I should finish it. If you can help me, thank you. Nice day ...
written 4 weeks ago by dott.difranco0
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Comment: C: Problem to start Breakdancer
... Unfortunately I don't have any friends who know linux. From your experience do you think it is impossible for me to undertake the SV reading of my genome? ...
written 4 weeks ago by dott.difranco0
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Comment: C: Problem to start Breakdancer
... First of all thank you for the technical support. I haven't make past and cut. So, I tried the following command (because my file bam is in this path /media/sf_hd500gb): /home/marcoubu/breakdancer/perl/bam2cfg.pl /media/sf_hd500gb/genoma S17-530 actual_breakdancer_options but I've this long e ...
written 4 weeks ago by dott.difranco0 • updated 4 weeks ago by RamRS27k
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Comment: C: Problem to start Breakdancer
... I'm using this commad (from https://gmt.genome.wustl.edu/packages/breakdancer/documentation.html): /usr/lib/breakdancer-max1.2/bam2cfg.pl bam_files breakdancer_options Howerver, on going, I've seen that in /usr/lib I don't find the folder breakdancer-max1.2, but this is strange because the instal ...
written 5 weeks ago by dott.difranco0
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Comment: C: Problem to start Breakdancer
... The file bam2cfg.pl exist in this path: `home/marcoubu/breakdancer-master/perl/bam2cfg.pl`. The file .bam exist too: `media/sf_hd500gb/genoma S17-530`. ...
written 5 weeks ago by dott.difranco0 • updated 5 weeks ago by RamRS27k
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Problem to start Breakdancer
... Hello everybody I'm new in this word of bionformatic and I'd want found structural variant on my bam file (that is stored in external HD) with breakdance. I've read [this guide](https://gmt.genome.wustl.edu/packages/breakdancer/documentation.html), but when I launch the first script: /usr/lib/b ...
sequence written 5 weeks ago by dott.difranco0 • updated 5 weeks ago by RamRS27k

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