User: ab4232

gravatar for ab4232
ab42320
Reputation:
0
Status:
New User
Last seen:
1 month ago
Joined:
1 month ago
Email:
p********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by ab4232

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
151
views
1
answers
Comment: C: Collapsing biological replicates for co-expression analysis using WGCNA
... I really appreciate you taking out time to reply and helping out. Earlier with fpkm I used log2(fpkm+1) for clustering etc. Just one last one. While further searching online, I came across this [link][1] . Do you think it is a good approach ? I understood till calculating Spearman's correlation, bu ...
written 4 weeks ago by ab42320
0
votes
1
answer
151
views
1
answers
Comment: C: Collapsing biological replicates for co-expression analysis using WGCNA
... Yes I am sure they are biological replicates. The samples are plant tissue samples collected at 25 different time points from 3 individuals (same genotype) grown in separate pots under identical conditions. With getting familiar with packages like DeSeq2, I learned not to collapse biological replic ...
written 4 weeks ago by ab42320
0
votes
1
answer
151
views
1
answers
Comment: C: Collapsing biological replicates for co-expression analysis using WGCNA
... Thanks. Really appreciate it. I have two small doubts. 1. Won't WGCNA will treat each biological replicate as individual sample ? 2. If I would like to perform clustering like k-means, to see expression pattern across the samples, then what to use because then again it will be across biological ...
written 4 weeks ago by ab42320
4
votes
1
answer
151
views
1
answer
Collapsing biological replicates for co-expression analysis using WGCNA
... First my sincere thanks to all community members. Posts here really helps people like us who are new in the field. Recently I completed a RNA-Seq project consisting 25 samples with 3 biological replicates each. In brief, due to absence of a reference genome for the organism of interest, I performed ...
wgcna deseq2 rna-seq written 5 weeks ago by ab42320 • updated 5 weeks ago by Kevin Blighe61k

Latest awards to ab4232

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1052 users visited in the last hour