User: bpvalderrama

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Posts by bpvalderrama

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Problems with filter and trimming 16S data
... Hi everyone! I 'm working with 16S data to filter for quality and trim prior to assign taxonomy to my reads. For that, I'm working with dada2 package for R. I tried to look the quality profile of the reads using plotQualityProfile function. The output make me doubt. **What should I do with these 2 ...
16srna R next-gen written 15 days ago by bpvalderrama0
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16S rRNA Filter and Trimming methods
... Hi Everyone! I'm currently learning how to assign taxonomy to gut microbiome data. I'm using [DADA2] [1] R package for that and following its tutorial from the official page. When reading some papers, I realize that there are many parameters that can be adjusted before filter and trim your data. ...
R 16s rrna metagenomics sequencing written 9 weeks ago by bpvalderrama0
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Resources to learn Machine Learning applications in metagenomics
... Hi everyone! I'm new in this bioinformatic approach to study microbial communities living in the gut. Because that, I'm looking for good open resources to learn machine learning (ML) and its applications for this purpose. It will be great if you can help me with that, either **ML for studying gut ...
gut microbiome microbiome machine learning written 10 weeks ago by bpvalderrama0 • updated 10 weeks ago by Jean-Karim Heriche23k

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