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4
replies
506
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how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 3 days ago by
ATpoint
82k • written 4 days ago by
rheab1230
▴ 140
0
votes
1
reply
506
views
Comment:
Comment: how to find genes that are significantly expressed in brain cortex samples
4 days ago by
rheab1230
▴ 140
0
votes
0
replies
171
views
beta coefficient improves after doing mediation analysis
coefficient
mediation
beta
regression
4 weeks ago by
rheab1230
▴ 140
0
votes
0
replies
455
views
Comment:
Comment: Manhattan plot for TWAS results
7 weeks ago by
rheab1230
▴ 140
5
votes
4
replies
455
views
Manhattan plot for TWAS results
TWAS
GWAS
manhattan-plot
7 weeks ago by
rheab1230
▴ 140
0
votes
1
reply
282
views
Comment:
Comment: How to show that correlation from one method is more significant than other meth
11 weeks ago by
rheab1230
▴ 140
0
votes
3
replies
282
views
How to show that correlation from one method is more significant than other method?
p-value
model-performance
significance
correlation
updated 10 weeks ago by
Shred
★ 1.4k • written 11 weeks ago by
rheab1230
▴ 140
0
votes
1
reply
691
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
5 months ago by
rheab1230
▴ 140
0
votes
1
reply
691
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by
rheab1230
▴ 140
1
vote
5
replies
691
views
how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect
statistics
SNP
multi-variate
updated 5 months ago by
LChart
3.9k • written 6 months ago by
rheab1230
▴ 140
0
votes
2
replies
502
views
how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp
GTEx
updated 7 months ago by
LChart
3.9k • written 7 months ago by
rheab1230
▴ 140
0
votes
4
replies
1.1k
views
error while installing peertools
peertools
updated 8 months ago by
Mensur Dlakic
★ 27k • written 2.4 years ago by
rheab1230
▴ 140
0
votes
0
replies
342
views
snps being shared by gene in different tissues
mechanism
shared
colocalization
snp
tissues
9 months ago by
rheab1230
▴ 140
0
votes
0
replies
274
views
how to calculate predicted expression using weights from model file
predicted-expression
R
predixcan
updated 10 months ago by
Ram
43k • written 10 months ago by
rheab1230
▴ 140
0
votes
0
replies
441
views
How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation
testing
glmnet
model
updated 10 months ago by
Ram
43k • written 10 months ago by
rheab1230
▴ 140
0
votes
1
reply
813
views
Comment:
Comment: rank SNPs after elastic net modeling
10 months ago by
rheab1230
▴ 140
0
votes
1
reply
813
views
Comment:
Comment: rank SNPs after elastic net modeling
10 months ago by
rheab1230
▴ 140
1
vote
5
replies
813
views
rank SNPs after elastic net modeling
SNPs
R
elastic-net
modeling
updated 10 months ago by
Shred
★ 1.4k • written 10 months ago by
rheab1230
▴ 140
0
votes
0
replies
356
views
how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp
R
heatmap
updated 10 months ago by
Ram
43k • written 10 months ago by
rheab1230
▴ 140
0
votes
0
replies
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
10 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
10 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
10 months ago by
rheab1230
▴ 140
4
votes
6
replies
1.1k
views
calculate p value and associated z score for snp-gene pair
snp
association
gene
pvalue
10 months ago by
rheab1230
▴ 140
0
votes
0
replies
527
views
Comment:
Comment: how to look for interactions between different chromosomes
10 months ago by
rheab1230
▴ 140
1
vote
2
replies
527
views
how to look for interactions between different chromosomes
SNP
interactions
Gene
HiC
10 months ago by
rheab1230
▴ 140
0
votes
1
reply
860
views
how to input bedpe file in IGV
IGV
interaction
input
bedpe
updated 11 months ago by
Pierre Lindenbaum
161k • written 11 months ago by
rheab1230
▴ 140
0
votes
1
reply
542
views
how to look at interacting SNP for a gene using Hic contact map
peak
interaction
contact-map
Hi-C
updated 11 months ago by
james.hawley
▴ 40 • written 11 months ago by
rheab1230
▴ 140
0
votes
0
replies
292
views
how to calculate minor allele frequency for each snp across samples
maf
snp
genotype
12 months ago by
rheab1230
▴ 140
0
votes
0
replies
629
views
Comment:
Comment: how to look at interaction between SNP and gene
12 months ago by
rheab1230
▴ 140
0
votes
0
replies
340
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 13 months ago by
Ram
43k • written 13 months ago by
rheab1230
▴ 140
0
votes
2
replies
629
views
how to look at interaction between SNP and gene
SNP
Gene
Hi-C
12 months ago by
rheab1230
▴ 140
0
votes
1
reply
486
views
how to import hdf5 Hi-C data into R using HiTC package
hdf5
importC
R
HiTC
updated 13 months ago by
rpolicastro
13k • written 13 months ago by
rheab1230
▴ 140
0
votes
0
replies
311
views
how to get genomic range for hi-c datasets in hdf5 file
R
hi-c
contact-map
genomic-ranges
updated 13 months ago by
Ram
43k • written 13 months ago by
rheab1230
▴ 140
0
votes
0
replies
306
views
how to interpret hi-c heatmap hdf5 file
heatmap
maps
hdf5
hi-c
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
308
views
inquiry related to Hi-C data download
Hi-C
datasets
human
brain-cortex
interaction
matrix
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
871
views
Comment:
Comment: how to create interacting Hi-C peaks
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
871
views
Comment:
Comment: how to create interacting Hi-C peaks
13 months ago by
rheab1230
▴ 140
0
votes
4
replies
871
views
how to create interacting Hi-C peaks
chromatin
interaction
gene
Hi-C
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
431
views
How to find association between a gene-rsid and AD
association
Loci
LD
AD
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
346
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
323
views
chia-pet tutorial
snp
gene
chia-pet
13 months ago by
rheab1230
▴ 140
0
votes
0
replies
1.4k
views
Comment:
Comment: how to use make.names commnad in r while using rbind function
13 months ago by
rheab1230
▴ 140
3
votes
3
replies
1.4k
views
how to use make.names commnad in r while using rbind function
R
13 months ago by
rheab1230
▴ 140
1
vote
1
reply
466
views
error while submitting a Rscript job through slurm
slurm
R
updated 14 months ago by
Ram
43k • written 14 months ago by
rheab1230
▴ 140
1
vote
0
replies
694
views
Comment:
Comment: installation of bioclite gives an error
14 months ago by
rheab1230
▴ 140
4
votes
2
replies
694
views
installation of bioclite gives an error
R
bioclite
bioconductor
Biocmanager
updated 11 months ago by
Ram
43k • written 14 months ago by
rheab1230
▴ 140
0
votes
0
replies
576
views
Comment:
Comment: difference between chip-seq and association study
14 months ago by
rheab1230
▴ 140
2
votes
2
replies
576
views
difference between chip-seq and association study
association
chip-seq
TWAS
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
384
views
comparison of gene models across tissues
elastinet
TWAS
models
association
15 months ago by
rheab1230
▴ 140
0
votes
1
reply
814
views
Comment:
Comment: gwas summary statistics
15 months ago by
rheab1230
▴ 140
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