User: Spencer

gravatar for Spencer
Spencer20
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2 weeks ago
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4 months, 3 weeks ago
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Posts by Spencer

<prev • 5 results • page 1 of 1 • next >
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How to calculate correlations between modules and samples in WGCNA?
... Hi all, After reading some WGCNA tutorials, I learned how to get some common values (e.g : correlations between modules and traits [ cor(MEs, datTraits)] , correlations between genes and traits[ cor(datExpr, datTraits)]), But, I wonder is there any method to obtain the cor between modules a ...
wgcna written 22 days ago by Spencer20
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Answer: A: Differential expression analysis with DESeq2
... just ignoring it. in most cases we need to set stringsAsFactors False to prevent unexpected error ...
written 6 weeks ago by Spencer20
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Comment: A: How can I obtain genome-wide coordinates for the motif of a particular transcrip
... it helped a lot ,thanks! ...
written 7 weeks ago by Spencer20
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How can I obtain genome-wide coordinates for the motif of a particular transcription factor?
... For example,i want to plot reads distribution around TBP motif (TATAWAWR), but i don't know these motif coordinates ,how can i get it? Thanks. ...
chip-seq written 7 weeks ago by Spencer20
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Question about the parameter -fs in bedtools.
... Hi, i have recently learned Bedtools,but i'm not totally understand the parameter -fs. For example,in the chip-exo pipeline in order to generate stranded read counts trim 1,using -fs. Code as following: bedtools genomecov -ibam bamfile -fs 1 -d -strand + bedtools genomecov -ibam bamfile -fs 1 -d -st ...
bedtools written 4 months ago by Spencer20

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