User: lexic2713

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lexic27130
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Posts by lexic2713

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Comment: C: How to filter a VCF file with a list of CHR or contig IDs?
... Hi, thank you both for the very helpful comments! This bash script worked out well. Since I was using vcf files, after creating the CHR output files, I bgzipped then indexed them all before using bcftools concat to combine all of the CHR files back together. Created some messy long text list of Cont ...
written 6 days ago by lexic27130
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How to filter a VCF file with a list of CHR or contig IDs?
... I need to subset/filter a SNP vcf file by a long list of non-sequential contig IDs, which appear in the CHR column. My VCF file contains 13,971 contigs currently, and I want to retain a specific set of 7,748 contigs and everything associated with those contigs (headers, all variants and genotype inf ...
vcf chromosome contigs vcftools awk written 22 days ago by lexic27130 • updated 22 days ago by drkennetz500

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