User: sidrah.maryam

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Posts by sidrah.maryam

<prev • 29 results • page 1 of 3 • next >
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Comment: C: Error in reading expression matrix
... Thanks for the suggestion. I would do so next time onwards. :) ...
written 4 days ago by sidrah.maryam20
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Comment: A: Generating barplot of fpkm value
... It is like, I have genes as rows and cells as columns, and the expression matrix. It is basically the output of cufflink. Actuallly whole question is: There are two categories of cells, and their expression matrix. I have to compare the aggregate fpkm values of specific genes in both types of cel ...
written 4 days ago by sidrah.maryam20
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Generating barplot of fpkm value
... Hello, I want to generate a barplot of fpkm value count, for specific genes, to have finally the graph showing, which cells have high expression of specific gene. All I have is fpkm count file from NCBI, in txt format. Can anyone please suggest how to proceed, I am totally noob in this, so could no ...
R fpkm rna-seq python written 4 days ago by sidrah.maryam20
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Comment: A: How to plot Raster plot
... Thanks a lot for your suggestions. It helped. ...
written 5 days ago by sidrah.maryam20
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How to plot Raster plot
... Hello! I have to generate raster plot. I have a matrix with time and trial information. Plotting can be done in any of these languages(R, PYTHON, MATLAB) Can anyone please help. Any help is highly appreciated. ...
R neuroscience matlab python written 25 days ago by sidrah.maryam20
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Comment: C: Extracting rows on basis of specific column values in R
... Thank you so much for your help ...
written 4 weeks ago by sidrah.maryam20
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Subsetting anndata on basis of louvain clusters
... Hello, I want to subset anndata on basis of clusters, but i am not able to understand how to do it. I am running scVelo pipeline, and in that i ran `tl.louvain` function to cluster cells on basis of louvain. I got around 32 clusters, of which cluster 2 and 4 is of my interest, and i have to run the ...
anndata python scanpy rna-seq R written 4 weeks ago by sidrah.maryam20
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Extracting rows on basis of specific column values in R
... I have a dataframe that contains various fields. An instance being: Protein Code Sequence CODON XYZ L AATTGCTA MET ABC K ATTGCTA MET-2 JKL B GCTTATA LYS-2 I want to extract information of all the elements in which the colum ...
R python dataframe datasets written 8 weeks ago by sidrah.maryam20 • updated 8 weeks ago by Shalu Jhanwar470
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Tornado.util.TimeoutError timed out after 20 s
... Hey everyone! I am trying to run scenic protocol, for network regulatory inference. The code command is pyscenic grn --num_workers 20 --output adj.tsv --method grnboost2 filtered.loom hs_hgnc_tfs.txt And I am getting the following error /home/sidrah19220/anaconda3/envs/scenic_protocol ...
software error python rna-seq programming written 3 months ago by sidrah.maryam20 • updated 3 months ago by genomax91k
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Comment: C: MACS peak calling error
... Thank you !! It solved the problem. The command was using macs2 installed at a different path. ...
written 3 months ago by sidrah.maryam20

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