User: Klugman

Klugman • 20

Reputation:: 20
Status:: New User
Location:: Australia
Last seen:: 1 year, 5 months ago
Joined:: 9 years, 12 months ago
Email:: i********@gmail.com

Useless postdoc with butterfingers

Posts by Klugman

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Comment: C: Tool to separate human and mouse rna seq reads

... appears to be bundled here https://github.com/data61/gossamer if it does not work (recent build, so should be OK), I have the original binaries that I downloaded from the NICTA site. ...

written 3.1 years ago by Klugman • 20

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Answer: A: Muscle Multiple Sequence Alignment: How To Allow Alignment With A Sequence That

... thankyou Andreas and Neilfws - I appreciate your input and will give the dash to non-AA letter replacement vs MUSCLE a go. I am (obviously ;) ) very new to bioinformatics, and wrote a downstream Perl script that requires (clunky and would probably make many bioinformaticians cry, but it does its job ...

written 8.4 years ago by Klugman • 20

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Muscle Multiple Sequence Alignment: How To Allow Alignment With A Sequence That Is Just Gaps

... I am currently using Clustal to align about orthologous proteins for about 50 species, but would like to use MUSCLE instead. Since I am examining thousands of proteins, I use the linux binary of MUSCLE. the Problem MUSCLE appears to not accept "empty" input sequences. That is, Protein X is not p ...

sequence alignment multiple written 8.5 years ago by Klugman • 20

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Aa Sequence From The Human Proteins Track

... hi, I am very new to bioinformatics, so I hope my question is not too silly. I am currently examining a newly sequenced genome deposited to UCSC (myoLuc2/microbat) and want to obtain the amino acid sequences from the Human Proteins Track. When I use the Genome Browser, I can click on the track an ...

ucsc browser written 8.6 years ago by Klugman • 20

Latest awards to Klugman

Popular Question 2.8 years ago, created a question with more than 1,000 views. For Aa Sequence From The Human Proteins Track

Popular Question 6.1 years ago, created a question with more than 1,000 views. For Muscle Multiple Sequence Alignment: How To Allow Alignment With A Sequence That Is Just Gaps