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Showing :
answers
0
votes
0
replies
1.3k
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Answer:
Answer: ENSEMBL VEP custom annotation with GFF file
3.7 years ago by
Emily
24k
3
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0
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957
views
Answer:
Answer: VEP Disk Space
3.8 years ago by
Emily
24k
0
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0
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1.2k
views
Answer:
Answer: Find all genes in multiple regions
3.8 years ago by
Emily
24k
0
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1
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1.7k
views
Answer:
Answer: how to find homologous regions using genomic coordinates
3.8 years ago by
Emily
24k
1
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1
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2.4k
views
Answer:
Answer: VEP, dbNSFP, Offline Mode, Cache version
3.8 years ago by
Emily
24k
2
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1
reply
2.2k
views
Answer:
Answer: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
3.8 years ago by
Emily
24k
2
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0
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2.9k
views
Answer:
Answer: if you annotate a vcf with snpeff, how do you know if the annotation are referri
3.8 years ago by
Emily
24k
1
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0
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960
views
Answer:
Answer: IGH on Ensembl
3.8 years ago by
Emily
24k
2
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0
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2.0k
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Answer:
Answer: Using VEP custom on ClinVar error - Couldn't find index.
3.8 years ago by
Emily
24k
1
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1
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905
views
Answer:
Answer: Ensembl fasta DNA data
3.8 years ago by
Emily
24k
2
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1
reply
1.5k
views
Answer:
Answer: How to get chromosomal position of list of RS number(GRCh38)?
3.8 years ago by
Emily
24k
2
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1
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2.3k
views
Answer:
Answer: Liftover vs Ensembl Crossmap
3.8 years ago by
Emily
24k
1
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0
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1.2k
views
Answer:
Answer: How can I revert back the ensemble vep annotated positions to vcf positions?
3.8 years ago by
Emily
24k
1
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1
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4.5k
views
Answer:
A: Is the ENSEMBL FTP down?
3.9 years ago by
Emily
24k
1
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0
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1.8k
views
Answer:
A: VEP missing refseq annotation in refseq cache?
3.9 years ago by
Emily
24k
1
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0
replies
1.4k
views
Answer:
A: VEP custom annotation didn't add INFO field
3.9 years ago by
Emily
24k
4
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1
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1.7k
views
Answer:
A: Getting the fasta format of a list of genes
3.9 years ago by
Emily
24k
2
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0
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675
views
Answer:
A: Ensembl REST to download transcript fastas
3.9 years ago by
Emily
24k
0
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0
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2.9k
views
Answer:
A: Biomart mmusculus_gene_ensembl mm39
3.9 years ago by
Emily
24k
0
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0
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998
views
Answer:
A: How many INDELs and SNPs should I expect in vcf file and what the best parameter
4.0 years ago by
Emily
24k
2
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1
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4.1k
views
Answer:
A: VEP is very slow. Fork doesnt seem to work
4.0 years ago by
Emily
24k
0
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0
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937
views
Answer:
A: How do I add a GENSCAN track to the Ensembl Gene Summary
4.0 years ago by
Emily
24k
1
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1
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3.6k
views
Answer:
A: How to get REF and ALT alleles from a genotype data?
4.0 years ago by
Emily
24k
0
votes
0
replies
1.8k
views
Answer:
A: Where can I find data about gene expression in such deseases as bipolar (maniaca
4.0 years ago by
Emily
24k
1
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0
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881
views
Answer:
A: Splice junction coordinates for Ensembl transcripts
4.0 years ago by
Emily
24k
3
votes
1
reply
1.6k
views
Answer:
A: Trying to refine REST API query
4.0 years ago by
Emily
24k
0
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1
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1.0k
views
Answer:
A: Mapping DNA position to Protein Position in E. Coli
4.0 years ago by
Emily
24k
3
votes
3
replies
5.6k
views
Answer:
A: VEP for cancer annotation using COSMIC
4.0 years ago by
Emily
24k
23
votes
4
replies
25k
views
Answer:
A: ensembl gene id
updated 4.0 years ago by
Ram
44k • written 10.2 years ago by
Emily
24k
3
votes
1
reply
3.6k
views
Answer:
A: VEP allele frequency from gnomAD genomes
4.0 years ago by
Emily
24k
0
votes
0
replies
1.4k
views
Answer:
A: Extract longest transcript from Ensembl gene table
4.0 years ago by
Emily
24k
1
vote
1
reply
1.8k
views
Answer:
A: VEP installation problem
4.0 years ago by
Emily
24k
4
votes
0
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2.0k
views
Answer:
A: Why VEP doesn't take strand into account?
4.0 years ago by
Emily
24k
1
vote
0
replies
1.1k
views
Answer:
A: Variant data from covid-19 patients
4.0 years ago by
Emily
24k
2
votes
1
reply
953
views
Answer:
A: ensembl-vep annotation fail
4.0 years ago by
Emily
24k
3
votes
0
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1.5k
views
Answer:
A: Why VEP annotates non-variants (homozygous reference)?
4.0 years ago by
Emily
24k
0
votes
0
replies
696
views
Answer:
A: genomic region haplotype
4.0 years ago by
Emily
24k
1
vote
1
reply
6.9k
views
Answer:
A: VEP cache issues
4.0 years ago by
Emily
24k
0
votes
1
reply
1.6k
views
Answer:
A: dbNSFP VEP plugin and tabix query give different results
4.0 years ago by
Emily
24k
2
votes
1
reply
714
views
Answer:
A: where can I find a table with the coordinates of all the exons in a specific tr
4.0 years ago by
Emily
24k
1
vote
1
reply
1.5k
views
Answer:
A: Understanding Variant Effect Predictor results
4.1 years ago by
Emily
24k
2
votes
0
replies
904
views
Answer:
A: Does VEP use alternative splicing in their calculations?
4.1 years ago by
Emily
24k
2
votes
0
replies
880
views
Answer:
A: How to how "Gene Legend", "Regulation Legend" & "Human cDNAs" for a DNA sequence
4.1 years ago by
Emily
24k
3
votes
0
replies
1.2k
views
Answer:
A: VEP coordinates do not result to same sequence as ref sequence in gsvar file
4.2 years ago by
Emily
24k
1
vote
0
replies
720
views
Answer:
A: Is there any update about adding more reference genomes of plant species on Ense
4.2 years ago by
Emily
24k
1
vote
0
replies
1.3k
views
Answer:
A: Problem with BiomaRt::useMart function Landscape Genomics
4.2 years ago by
Emily
24k
1
vote
1
reply
1.7k
views
Answer:
A: I am confused which allele is the wildtype for certain SNPs
4.2 years ago by
Emily
24k
1
vote
0
replies
1.5k
views
Answer:
A: VEP repeated region flag
4.2 years ago by
Emily
24k
1
vote
0
replies
1.3k
views
Answer:
A: LINK SNPS TO GENES USING BIOMART, KEEPING YOUR INITIAL POSITIONS IN THE RESULTIN
4.3 years ago by
Emily
24k
2
votes
0
replies
1.1k
views
Answer:
A: retrieve matched genome/annotation pairs using Ensembl API
4.3 years ago by
Emily
24k
643 results • Page
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