User: gabi

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gabi20
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1 day, 21 hours ago
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2 weeks, 2 days ago
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Posts by gabi

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to plot genomic regions using KaryoplotR
... Hi Bernat, My gr chromosomes were indeed Ensembl style. Adding ```seqlevelsStyle(gr) <- "UCSC" ``` does solve the problem and I'm getting beautiful plots now :) Thank you @bernatgel for the extensive and clear response! ...
written 10 days ago by gabi20
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Comment: A: How to plot genomic regions using KaryoplotR
... Thanks for your answer ...
written 10 days ago by gabi20
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Comment: C: How to plot genomic regions using KaryoplotR
... Thanks for formatting the code part (I have no idea how to do it). Yes it is just the path. ...
written 14 days ago by gabi20
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How to plot genomic regions using KaryoplotR
... Hi everyone, I am trying to plot genomic regions using KaryoplotR. I have been following the tutorial page, I converted my data frame into Granges object, however the tool does not work with my data. My data frame is simply a list of genomic location ['chr', 'start', 'end'] The following script do ...
R karyoplotr written 14 days ago by gabi20
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Comment: A: Thousands of significant SNPs
... Does the QQ plot looks ok? Are you trying to select SNPs for Stage-2 GWAS? ...
written 16 days ago by gabi20

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