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Batch effect correction methods (Seurat v3, Harmony, fastMNN, Liger)
integration Batch seurat fastMNN Harmony
2.1 years ago by re_raz ▴ 70
6
votes
4
replies
2.5k
views
Single cell RNA-seq analysis
RNA-Seq
updated 3.4 years ago by ▴ 60 • written 4.8 years ago by ▴ 70
7
votes
2
replies
8.6k
views
The difference between merge and integration with Seurat objects
integration merge Seurat
3.4 years ago by re_raz ▴ 70
0
votes
2
replies
1.1k
views
What is the difference between filtering cells before creating Seurat object and after that?
Seurat filter cells
3.5 years ago by re_raz ▴ 70
5
votes
4
replies
16k
views
different between SCTransform and NormalizeData
R scRNA-seq Normalization SCTransform
4.6 years ago by re_raz ▴ 70
0
votes
3
replies
2.3k
views
single cell RNA analysis
scrna-seq Seurat SCTransform memory
4.6 years ago by re_raz ▴ 70
1
vote
7
replies
3.4k
views
reached iteration limit in SCTransform
SCTransform RNA-Seq seurat
updated 4.7 years ago by 150k • written 4.7 years ago by ▴ 70
4
votes
6
replies
1.8k
views
Gene expression from cell counts matrix
RNA-Seq gene expression
updated 4.7 years ago by 150k • written 4.7 years ago by ▴ 70
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