User: lmck0705

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lmck07050
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Posts by lmck0705

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Converting mouse Ensembl ID's to gene names in a data frame
... I have recently produced an unsupervised hierarchical cluster heat map using 30 different RNA-seq samples. The x axis is labelled as the name of each sample, and the y axis displays the 100 most variable genes presented as mouse Ensembl ID's (e.g. ENSMUSG00000020573). I was just wondering if there ...
R biomart pheatmap rna-seq clustering written 4 hours ago by lmck07050 • updated 3 hours ago by Kevin Blighe61k
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Comment: A: Problem with DESeq package: ncol(countData) == nrow(colData) is not TRUE
... Sorry, I made a mistake. My input was this: samples<-read.table("RNAseq_sample3.txt",sep="\t",header=T, fill=TRUE) files <- list.files("./",pattern=".genes.results") names(files) <-samples$sample txi.rsem <- tximport(files, type = "rsem", txIn = FALSE, txOut = FALSE ...
written 11 days ago by lmck07050
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Problem with DESeq package: ncol(countData) == nrow(colData) is not TRUE
... Hi, I am new to R and trying to carry out unsupervised hierarchical clustering on an RNA-seq data set (30 different gene.result files). **I am inputting this code:** samples<-read.table("RNAseq_sample3.txt",sep="\t",header=T, fill=TRUE) files <- list.files("./",pattern=".genes. ...
R deseq rstudio rna-seq written 11 days ago by lmck07050

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