User: oscarmirap

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oscarmirap10
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Posts by oscarmirap

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Comment: C: vcftools discrepancy in mean depth values per site
... Thanks for the heads up on "missing", Kevin, you are right. Yes, before seeing your answer we were discussing already that it will be better to write our own script, in perl in my case. Cheers! Óscar ...
written 1 day ago by oscarmirap10
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vcftools discrepancy in mean depth values per site
... Dear all, I'm using VCFtools 0.1.17 to filter out loci with low coverage, this is the process: 1. Use --site-mean-depth to get a "table.ldepth.mean" with the mean values per site. 2. Calculate manually how many loci there are above different mean depth values, and choose a minimum depth value. ...
vcf depth coverage snp vcftools written 2 days ago by oscarmirap10 • updated 2 days ago by Kevin Blighe61k

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