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Posts by Hangthelaundry
Comment: C: genePredToGtf wrong output
... Thank you for your answer, h.mon. It saved a lot of time for me! It is smart to use SAF instead of GTF, and it works now! I just want to add for other people that featureCounts has very stringent requirement to SAF feature (first column), first column with pure number, "peak_NR", "peak.NR", were a ...
... Hi all, I am trying to analyze the deposition of a histone modification in ChIP-seq. So I got the union peak bed file, it looks like this: chr1 5162780 5163619 chr1 6205640 6214319 chr1 6215300 6215579 chr1 6217540 6218379 to count the fragments on the peaks, I want t ...
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