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Posts by atikahfm15
... actually that directory is the result from process_radtags. do you think I did wrong from the process_radtags step? my script for process_radtags is below: ./stacks-2.41/process_radtags -P -1 ./raw/Index_AAAAG_R1_002.fastq.gz -2 ./raw/Index_AAAAG_R2_002.fastq.gz -b Barcodes.csv -c -q -r -o ./output ...
... Hi, everyone! I just started to learn STACKS for ddRAD Sequencing data. I have problem in ustacks stage. my script: ./stacks-2.41/ustacks -m 3 -M 2 -i 1 -p 15 -o ./ustacks -f ./outputstacks/ AmphinM_49.1.fq.gz/AmphinM_49.1.fq The result: stacks parameters selected: Input file ...
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