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Comment: Comment: Create Conda Environment with YAML File
5 weeks ago by cthangav ▴ 100
1
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2
replies
486
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Comment: Comment: Create Conda Environment with YAML File
5 weeks ago by cthangav ▴ 100
7
votes
8
replies
486
views
Create Conda Environment with YAML File
Python
updated 5 weeks ago by ★ 1.9k • written 6 weeks ago by ▴ 100
0
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0
replies
1.6k
views
Comment: Comment: How to overlay tracks in IGV?
8 months ago by cthangav ▴ 100
0
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0
replies
4.5k
views
Comment: Comment: Get TPM from RNA counts and gene length?
8 months ago by cthangav ▴ 100
0
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1
reply
1.6k
views
Comment: Comment: How to overlay tracks in IGV?
8 months ago by cthangav ▴ 100
2
votes
8
replies
1.6k
views
How to overlay tracks in IGV?
R IGV
8 months ago by cthangav ▴ 100
0
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1
reply
1.6k
views
Comment: Comment: How to overlay tracks in IGV?
9 months ago by cthangav ▴ 100
0
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1
reply
1.6k
views
Comment: Comment: How to overlay tracks in IGV?
9 months ago by cthangav ▴ 100
0
votes
0
replies
373
views
How to make Cicero Spider Plot
R Cicero IGV
9 months ago by cthangav ▴ 100
19
votes
4
replies
5.2k
views
Convert Human to Mouse Symbols
biomart R gene-symbols
updated 9 months ago by ★ 1.6k • written 10 months ago by ▴ 100
0
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0
replies
5.2k
views
Comment: Comment: Convert Human to Mouse Symbols
10 months ago by cthangav ▴ 100
0
votes
1
reply
447
views
Putting Multiple ANOVA P-Values on Violin Plot
violin R ANOVA
updated 10 months ago by 10k • written 10 months ago by ▴ 100
0
votes
1
reply
549
views
Heatmap / Gene List Similarity
R
updated 10 months ago by ▴ 260 • written 10 months ago by ▴ 100
2
votes
1
reply
489
views
Filtering content in heatmap to highest values
R heatmap ggplot2
10 months ago by cthangav ▴ 100
5
votes
2
replies
491
views
Graphing Average Expression of Group of Genes
Boxplot R
updated 11 months ago by ★ 1.4k • written 11 months ago by ▴ 100
1
vote
2
replies
646
views
Identifying/Annotating Enhancers
bedtools R ENCODE
updated 10 months ago by 43k • written 11 months ago by ▴ 100
2
votes
1
reply
553
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 11 months ago by 11k • written 11 months ago by ▴ 100
3
votes
1
reply
625
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 12 months ago by ★ 7.0k • written 12 months ago by ▴ 100
6
votes
3
replies
878
views
How to make line graph with circles in R
R
updated 13 months ago by ★ 2.0k • written 13 months ago by ▴ 100
0
votes
0
replies
4.5k
views
Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by cthangav ▴ 100
0
votes
2
replies
4.5k
views
Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by cthangav ▴ 100
13
votes
14
replies
4.5k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
8 months ago by cthangav ▴ 100
2
votes
1
reply
703
views
Get GO Term Size from GO ID
GO-term R
updated 15 months ago by 43k • written 15 months ago by ▴ 100
2
votes
2
replies
626
views
Genes With List of Go terms
go-terms GO
updated 9 months ago by 43k • written 15 months ago by ▴ 100
0
votes
0
replies
5.9k
views
Comment: Comment: Is the MACS pileup output normalized
15 months ago by cthangav ▴ 100
0
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0
replies
704
views
Comment: Comment: Left Join Issue in R
16 months ago by cthangav ▴ 100
0
votes
1
reply
704
views
Comment: Comment: Left Join Issue in R
16 months ago by cthangav ▴ 100
2
votes
3
replies
704
views
Left Join Issue in R
R
16 months ago by cthangav ▴ 100
2
votes
1
reply
558
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 17 months ago by 82k • written 17 months ago by ▴ 100
0
votes
0
replies
440
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
24 months ago by cthangav ▴ 100
1
vote
2
replies
1.1k
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 2.2 years ago by 82k • written 2.2 years ago by ▴ 100
0
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0
replies
1.1k
views
Comment: Comment: How to deal with multiple transcripts of the same gene?
2.2 years ago by cthangav ▴ 100
0
votes
0
replies
681
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
2.5 years ago by cthangav ▴ 100
3
votes
2
replies
846
views
Batch File For Loop Help
syntax
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 100
0
votes
0
replies
645
views
Feature selection
Feature Selection R
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 100
0
votes
0
replies
607
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
2.6 years ago by cthangav ▴ 100
0
votes
0
replies
1.5k
views
Comment: Comment: Looking up Gene IDs in R
2.6 years ago by cthangav ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: Looking up Gene IDs in R
2.7 years ago by cthangav ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: Looking up Gene IDs in R
2.7 years ago by cthangav ▴ 100
5
votes
6
replies
1.5k
views
Looking up Gene IDs in R
R
2.6 years ago by cthangav ▴ 100
0
votes
0
replies
4.4k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
2.8 years ago by cthangav ▴ 100
0
votes
1
reply
4.4k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
2.8 years ago by cthangav ▴ 100
1
vote
5
replies
4.4k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: Is the pileup value the ATAC-seq counts?
2.8 years ago by cthangav ▴ 100
0
votes
2
replies
1.2k
views
Is the pileup value the ATAC-seq counts?
ATAC
2.8 years ago by cthangav ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: Memory Error
3.0 years ago by cthangav ▴ 100
1
vote
1
reply
1.5k
views
Comment: Comment: Memory Error
3.0 years ago by cthangav ▴ 100
1
vote
5
replies
1.5k
views
Memory Error
R Memory MOFA
updated 3.0 years ago by ★ 2.5k • written 3.0 years ago by ▴ 100
0
votes
1
reply
3.2k
views
Is there a way to remove certain chromosomes from a GRanges Object?
GenomicRanges Package GRanges
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 100
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