User: zjxia

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zjxia0
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Posts by zjxia

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Answer: A: Question: can not obtain DESeq2 results
... Thanks everyone, I have resolved the problem. Upgrade the Bioconductor(3.9->3.10), and together 50 packages were updated. The version of DESeq2 was upgrade from 1.24 to 1.26, then the error disappeared. ...
written 4 weeks ago by zjxia0
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Comment: C: Question: can not obtain DESeq2 results
... I uninstalled 14 too new package, and reinstalled "DESeq2" and dependent package use BiocManager::install, error remains unsolved. > res <- results(dds, contrast=c("condition","normal","tumor")) Error in .wrap_in_length_one_list_like_object(value, name, x) : failed to co ...
written 4 weeks ago by zjxia0 • updated 4 weeks ago by genomax87k
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Comment: C: Question: can not obtain DESeq2 results
... yes, but found no tips ...
written 4 weeks ago by zjxia0
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Question: can not obtain DESeq2 results
... Dear all, I am trying to run DESeq2 to get the list of differential expressed genes between tumor and normal samples. However I could not get result: code: group=c(rep("normal",39),rep("tumor",81)) condition <- factor(group,levels = c("normal","tumor")) coldata <- data.frame(row. ...
forum deseq2 rna-seq written 4 weeks ago by zjxia0

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Scholar 4 weeks ago, created an answer that has been accepted. For A: Question: can not obtain DESeq2 results

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