User: Waly

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Waly0
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Posts by Waly

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position specific energy matrix psem, when can I get them?
... Hi everyone, I'm analyzing transcription factore binding cites at a genome scale, and I use an algorithm that defines those based on psem (position specific energy matrices) and in there paper they mention them being downloaded from Jaspar , however, if I go to Jaspar I can only find the count mat ...
R sequence written 12 weeks ago by Waly0
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Bedtools - can I operate two operations same time, and on the same database?
... Hi everyone, I'm using the bedtools to find the closest hits between 2 databases and merge them to one file, but I wonder if I can have a command that operates for example; closest + intersect on the same database and same time; is this possible? can anyboday help me with the right commands? than ...
bedtools written 12 weeks ago by Waly0 • updated 12 weeks ago by Alex Reynolds31k
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Using CAGEr Bioconductor R package
... Hi everyone, I'm trying to use CAGEr offered via Bioconductor https://bioconductor.org/packages/devel/bioc/manuals/CAGEr/man/CAGEr.pdf I face issues trying to load my .bam files to R, after forging the genome, and defining an index for every file using the samtools; here are more details: I com ...
genome R rna-seq written 3 months ago by Waly0 • updated 10 weeks ago by svet0

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