User: Lucas

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Lucas0
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Posts by Lucas

<prev • 7 results • page 1 of 1 • next >
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How do commercially NIPT tests work?
... Hi For NIPT analysis there are some free software packages like wisecondor, WisecondorX, Sanefalcon and Defrag; but all these tools need to be trained correctly to give us an accurate result, as I tested some other trained models from other labs and they didn't work correctly on my samples, BUT wha ...
defrag wisecondorx sanefalcon ngs nipt written 14 days ago by Lucas0
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How to use seqff.r script (estimating fetal fraction)
... Hi Dear Colleagues, I downloaded seqff package [here][1], but I don't know how to use it properly. I have some fastq files generated by Illumina machine, I want to analyze them, as I understood, I have to convert them to mapped sam files and then analyze them using seqff.r script. The seqff.r scr ...
ngs fetal_fraction seqff written 22 days ago by Lucas0
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Comment: C: Size of the demultiplexed fastq files
... Thank you very much. ...
written 22 days ago by Lucas0
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Size of the demultiplexed fastq files
... Hi I've demultiplexed a fastq file into the individual samples, but it seems there is something wrong, the size of the individual samples is various, and this difference sometimes is really high, for example about 1 GB. Is it normal? Almost all the samples volume is the same, for example 1.4, 1.5 ...
ngs next-gen fastq demultiplexing demultiplex written 22 days ago by Lucas0 • updated 22 days ago by genomax87k
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Comment: C: Demultiplexing IONA generated data
... Thank you very much, But they are selling the kit, they MUST provide the barcode sequences as well as other companies like Thermo Fisher. It's really strange. Is there any body from Yourgene-Health in this forum? I think they have to provide the sequences, if somebody wants to use other bioinformati ...
written 23 days ago by Lucas0
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Demultiplexing IONA generated data
... As I said [here][1], I'm working on my MSc thesis and I don't have access to relaible NIPT data, but recently I achieved some multiplexed data that are generated by IONA®, that belongs to Yourgene-Health (Premaitha), but I don't have the barcodes to demultiplex them. Anybody has the barcodes of th ...
ngs nipt sequencing written 25 days ago by Lucas0
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Looking for sample data for training NIPT software packages
... Hi Dear Colleagues, I'm working on my MSc thesis, I need some NIPT raw data to train some software like wisecondor and sanefalcon, but at the university I work, I don't have access to such data. Is there any site/ftp etc. that I can downlaod sample NIPT data? Also I need the data generated by **Ill ...
ngs nipt written 25 days ago by Lucas0

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