User: TFTF

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TFTF30
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Posts by TFTF

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Where/how should processed data be deposited when raw data was already published
... Thanks! It does indeed seem to be allowed in Zenodo, and there are also nice features linking to GitHub. ...
written 8 days ago by TFTF30
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Where/how should processed data be deposited when raw data was already published?
... As part of an accepted paper I would like to share both the code and data files so readers can reproduce my results. The code is easy to share via a public repository (e.g. GitHub). However, I am unsure about how to share the data. This is a computational project, so we use published genomic sequenc ...
reproducibility repository written 8 days ago by TFTF30 • updated 8 days ago by genomax46k
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Comment: C: How To Visualize Custom 2D Genomic Data In A Genome Browser?
... Thanks, I have played with Haploview a bit before. Do you know if it supports upload of custom (non LD) data and whether it can show 1d and 2d multiple datasets in parallel? ...
written 5.2 years ago by TFTF30
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Comment: C: How To Visualize Custom 2D Genomic Data In A Genome Browser?
... Thanks, this is good to know. Unfortunately it does not fit well the type of datasets and comparisons that I had in mind. ...
written 5.2 years ago by TFTF30
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Comment: C: How To Visualize Custom 2D Genomic Data In A Genome Browser?
... Thanks, this is exactly what I am looking for, but does the ensembl browser support uploading custom 2d data? Also, do you know if there is a local/offline version? ...
written 5.2 years ago by TFTF30
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Comment: C: How To Visualize Custom 2D Genomic Data In A Genome Browser?
... @Istvan I gave LD data as an example of 2d data, I want to be able to upload multiple arbitrary 2d data sets and show them. I explicitly explained what I mean by 2d, but I have now clarified that further. Thanks. ...
written 5.2 years ago by TFTF30
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How To Visualize Custom 2D Genomic Data In A Genome Browser?
... There is a large array of different genome browsers, each with its own characteristics. Obviously a lot of work has been put into developing these. However, I was surprised that I could not find any genome browser that supports visualization of 2d genomic data as well as 1d genomic data (genomic tra ...
genome-browser written 5.2 years ago by TFTF30 • updated 4.3 years ago by Biostar ♦♦ 20

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Popular Question 5.1 years ago, created a question with more than 1,000 views. For How To Visualize Custom 2D Genomic Data In A Genome Browser?

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