User: danekhoffman0319
danekhoffman0319 • 0
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Posts by danekhoffman0319
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... Unfortunately, I am limited to jupyter-lab at the moment, though I see your point. ...
written 5 days ago by
danekhoffman0319 • 0
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... import gzip
input_file = open("example.bed","rb")#compress existing file
data = input_file.read()
with gzip.open("example.bed.gz", "wb") as filez:
filez.write(data)
filez.close()
import pandas as pd#converts gz file to .txt
df=pd.read_csv("example.bed.gz", d ...
written 5 days ago by
danekhoffman0319 • 0
• updated
5 days ago by
Alex Reynolds ♦ 30k
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... Thank you, this is what I suspected but I wanted a second opinion! ...
written 10 days ago by
danekhoffman0319 • 0
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... I am curious to know how htseq will assign a read to a particular transcript if said read maps to a shared exon between two isoforms? If anyone has any experience with this or can offer any insight it would be greatly appreciated. Thank you in advance.
...
written 10 days ago by
danekhoffman0319 • 0
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10 days ago by
i.sudbery ♦ 9.1k
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... I am interested in knowing if anyone can recommend any good resources for learning how to submit jobs on a unix based cluster. For example, I already have R scripts for aligning and performing DGE analysis that run on my computer but I would like to utilize the cluster for future analysis. Does anyo ...
written 12 days ago by
danekhoffman0319 • 0
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... Does anyone know of any good mouse whole transcriptome databases that are organized by tissue? I am looking specifically for a database of mRNAs from mouse whole blood. ...
written 22 days ago by
danekhoffman0319 • 0
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... Hello,
Does anyone have any experience extracting unmapped reads from BAM files and converting them back to fastq format using Rsamtools? If you could provide some generic code to address this problem it would be greatly appreciated.
I am mapping C. elegans RNA library against E. coli genome to re ...
written 9 weeks ago by
danekhoffman0319 • 0
• updated
9 weeks ago by
Shalu Jhanwar • 460
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