User: sskimvd

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sskimvd0
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Posts by sskimvd

<prev • 5 results • page 1 of 1 • next >
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data prerprocessing coding
... I want to move the row that matches the first row of data1 to the last row of data1. data1 id s1 s2 s3 s4 a 1 0 2 1 b 2 0 1 2 b 0 0 1 1 c 0 1 2 2 data2 id here a a1 ...
R written 15 days ago by sskimvd0 • updated 14 days ago by cpad011214k
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data prerprocessing coding
... I have 200 columns and 80,000 rows of data. Rows contain duplicate data. I want to extract only the unique data from the duplicated data in the row, but leave only the maximum value in the column among the duplicated rows. How can I do it? ![https://i.ibb.co/72xT8Gv/13.png][1] thank you [1] ...
R snp sequencing written 28 days ago by sskimvd0 • updated 16 days ago by rpolicastro3.3k
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manhattan plot problem
... hi The linear regression result was confirmed with a Manhattan plot. Why is there a line like in the red box? Thank you. ![https://i.ibb.co/BZyVdzG/11.png][1] [1]: https://i.ibb.co/BZyVdzG/11.png ...
R chip-seq snp written 5 weeks ago by sskimvd0
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EPACTS and PLINK
... Hello EPACTS (q.lm / q.emmax) and PLINK (-linear) are linear regression. Why is snp's P-value different? Have you ever experienced mendelian randomization through EPACTS? I switched EPACTS from PLINK to VCF files, but would it be a problem? Since all of the files in the VCF file are ".", we changed ...
assembly alignment chip-seq snp written 5 months ago by sskimvd0
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vcf.gz file Modified
... Hello The filter column in the vcf.gz file is all "." Is there a way to replace "." with "PASS"? Thank you. ...
chip-seq written 6 months ago by sskimvd0 • updated 6 months ago by Pierre Lindenbaum133k

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