User: bioinfo_cat

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Posts by bioinfo_cat

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Comment: C: fastqc fails only in my directory - not my coworkers
... That would make a lot of sense - I am contacting server support to ask to have a reinstallation done since I don't have the permissions to. Thank you! ...
written 4 weeks ago by bioinfo_cat0
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fastqc fails only in my directory - not my coworkers
... I have not been able to run fastqc on any files that were transferred directly from my coworkers directory to mine. I transferred the whole folder from theirs to my directory, I do not have 'w' or 'x' permissions in their directory but all of the files in mine do, I checked. They were able to succ ...
assembly rna-seq written 4 weeks ago by bioinfo_cat0
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Salmon number of burn-in fragments warning
... I am very new to salmon so I'm sorry if this is a silly question but I am trying to map some RNA-seq data to a seabass Transcriptome. I've made an index and am making to it but I get a very low mapping rate. I've been able to improve it but it is still 16%. There is this warning: >Only 280746 ...
salmon mapping rna-seq written 12 weeks ago by bioinfo_cat0 • updated 12 weeks ago by h.mon31k
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Salmon indexing directory missing files?
... Hi, I am new to salmon and am trying to build an index. My samples are from Black Sea Bass. My first attempt at building the index I think was successful but it gave me only a 2.4% mapping rate, I know this is bad but one of the things that was suggested to me to try to troubleshoot was to use a tr ...
software error alignment rna-seq written 3 months ago by bioinfo_cat0

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