User: kumari.indu31

Reputation:
0
Status:
New User
Last seen:
2 months ago
Joined:
6 months ago
Email:
k************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by kumari.indu31

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
114
views
0
answers
Comment: C: SnpSift case control command for multiple samples
... My question is regarding how can I define no. of samples in the command in script so that there is no need to add "+" symbol manually. ...
written 9 weeks ago by kumari.indu310
1
vote
0
answers
114
views
0
answers
SnpSift case control command for multiple samples
... We are trying to write a script which can analyse multiple samples for SnpSift CaseControl. There is "+" symbol in the command to represent the no. of samples. How to define this option of the command in the script. Here is the script, we are trying to run, but it is not working. #!/bin/bash for f1 ...
snpsift casecontrol next-gen snp rna-seq written 9 weeks ago by kumari.indu310
0
votes
0
answers
276
views
0
answers
Comment: A: To remove variants that encode for PE-PPE proteins from .vcf file
... We did removed proteins using bcftools view --exclude, however, after running Annovar, we are facing same problem. ...
written 6 months ago by kumari.indu310
0
votes
0
answers
276
views
0
answers
Comment: A: To remove variants that encode for PE-PPE proteins from .vcf file
... We have tried this command as well: bcftools view --targets-file not-pe-ppe.bed R883_Filter.vcf > R883_no_PE.vcf However, when we annotate file using annovar then we are still finding PE-PPE genes in the final plot. ...
written 6 months ago by kumari.indu310
0
votes
0
answers
276
views
0
answers
To remove variants that encode for PE-PPE proteins from .vcf file
... We re trying to remove PE-PPE proteins from filtered .vcf file using the following commands: intersectBed -a R883_Filter.vcf -b pe_ppe.bed -header > output.vcf vcftools --vcf R883.vcf --exclude-positions-overlap pe_ppe_pos.txt --recode --recode-INFO-all --out R883_pos.vcf bedtools ...
bedtools annovar vcftools written 6 months ago by kumari.indu310

Latest awards to kumari.indu31

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2529 users visited in the last hour
_