User: gina.abdelaal

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Posts by gina.abdelaal

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Comment: C: Help with differential expression microarray data using oligo: adjusted p values
... I have checked and I found only one probe for NDRG1 affy_hugene_2_0_st_v1 ensembl_gene_id external_gene_name 1 17081401 ENSG00000104419 NDRG1 description gene_biotype 1 N-myc downstream regulated 1 [S ...
written 11 days ago by gina.abdelaal0
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Comment: C: Help with differential expression microarray data using oligo: adjusted p values
... Thank you for your response. I was hoping there would be some DE genes and that the gene knockdown of NDRG1 was successful. But it looks like the difference between the control and knockdown is not significant enough. I was just curious if it was my code or the data, and it seems like the latter wa ...
written 12 days ago by gina.abdelaal0
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Comment: C: Help with differential expression microarray data using oligo: adjusted p values
... I have added in the results table. ...
written 12 days ago by gina.abdelaal0
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Help with differential expression microarray data using oligo: adjusted p values are very high
... Hello Biostars I have been using the following script for differential expression of affymetrix microarray data for several datasets, however I keep getting very high adjusted p values so I believe I am missing out a step. Apologies in advance for the very long post but I think it's important to sho ...
R oligo microarray limma written 13 days ago by gina.abdelaal0

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