User: bryanchang2016

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Posts by bryanchang2016

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How to predict protein structure changes based on ensembl base changes
... Hello, I am new to bioinformatics, but I wanted to make predictions on protein structure based on some base changes I've identified using ensembl in Cryptococcus neoformans. At the moment I've got a list of genes and the variant bases, however I am not sure how I can use this data to make prediction ...
ensembl protein written 5 weeks ago by bryanchang201610
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Comment: C: how to find snp changes between pairs of samples that have genomes sequenced
... I have compared each sample to reference on veupathdb and have obtained vcf files for each sample. But is there a way I can do bcftool on veupathdb/fungidb to find changes between two vcf files (resistant/nonresistant)? ...
written 7 weeks ago by bryanchang201610
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Comment: C: how to find snp changes between pairs of samples that have genomes sequenced
... [here is the link to the database][1] [1]: https://www.ebi.ac.uk/ena/data/view/PRJEB28390 ...
written 7 weeks ago by bryanchang201610
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how to find snp changes between pairs of samples that have genomes sequenced
... Hi everyone I'm new to bioinformatics and I want to identify significant snp changes between pairs of samples (patient isolates that are resistant and non-resistant to fluconazole) of cryptococcus neoformans which have had their genomes sequenced and [put on ebi database[1] I've tried looking for a ...
genome variant written 7 weeks ago by bryanchang201610

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