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6
votes
4
replies
322
views
Equivalent to SeqMan alignment tool
SeqMan alignments
5 weeks ago by A_heath ▴ 120
8
votes
3
replies
515
views
Package installation error using Bioconda
antismash Bioconda
3 months ago by A_heath ▴ 120
1
vote
0
replies
257
views
Identification of V1 to V9 regions 16S
V9 V1 16S identification
updated 5 months ago by 3.3k • written 5 months ago by ▴ 120
12
votes
8
replies
589
views
Align 16S sequence to a reference
16S sequence alignment
updated 6 months ago by 3.3k • written 6 months ago by ▴ 120
1
vote
0
replies
258
views
Strand orientation and GC skew
strand skew CGView orientation CG
7 months ago by A_heath ▴ 120
15
votes
6
replies
870
views
Updating BLAST+ and PATH variable
BLAST PATH
7 months ago by A_heath ▴ 120
23
votes
12
replies
1.0k
views
Genes encoded on both strands of DNA?
sense anti-sense Genes strand
updated 10 months ago by 70k • written 10 months ago by ▴ 120
1
vote
2
replies
443
views
VirulenceFinder docker pip3 not found
VIrulenceFinder pip3 docker
updated 11 months ago by ★ 1.6k • written 11 months ago by ▴ 120
0
votes
1
reply
293
views
Close genome comparison
Mauve genome comparison GSAlign Mugsy
updated 12 months ago by 20k • written 12 months ago by ▴ 120
7
votes
6
replies
914
views
Bacterial genome hybrid assembly
Bacteria Assembly Genome
12 months ago by A_heath ▴ 120
6
votes
3
replies
1.9k
views
Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
assembly hybrid SPAdes
updated 19 months ago by ▴ 460 • written 19 months ago by ▴ 120
8
votes
4
replies
649
views
BLASTn: extract unmatched regions only
BLASTn extraction unmatched
16 months ago by A_heath ▴ 120
0
votes
0
replies
222
views
Sort aligned sequences - Mugsy
genome alignment mugsy
16 months ago by A_heath ▴ 120
8
votes
5
replies
1.2k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
filtering command BLASTp results line
updated 17 months ago by 14k • written 17 months ago by ▴ 120
0
votes
0
replies
304
views
Recommendations for a tool to check multiplex dPCR cross hybridations between probes
probes tool multiplex dPCR
17 months ago by A_heath ▴ 120
9
votes
4
replies
923
views
Illumina Q score
Illumina quality score
updated 18 months ago by 126k • written 18 months ago by ▴ 120
2
votes
3
replies
1.1k
views
Racon command line with paired-ends Illumina reads
Racon Illumina polishing
updated 18 months ago by 21k • written 18 months ago by ▴ 120
7
votes
4
replies
1.5k
views
Structural variant breakend
structural variant breakend
updated 18 months ago by ★ 2.9k • written 18 months ago by ▴ 120
1
vote
1
reply
541
views
IGV sequence name error .sam file
sam graphmap IGV
updated 20 months ago by ★ 5.0k • written 20 months ago by ▴ 120
9
votes
6
replies
787
views
Genotype meaning
genotype BL21
20 months ago by A_heath ▴ 120
0
votes
1
reply
1.3k
views
BL21 vs BL21 Star
E.coli BL21
updated 2 days ago by 38k • written 20 months ago by ▴ 120
0
votes
2
replies
651
views
Unicycler error not enough memory available
assembly unicycler memory
updated 20 months ago by ★ 23k • written 20 months ago by ▴ 120
5
votes
2
replies
498
views
Annotation Mycoplasma genome using Prokka
Mycoplasma Annotation Prokka
21 months ago by A_heath ▴ 120
0
votes
3
replies
636
views
Mapping fastq files to reference genome
fastq reference genome mapping
updated 21 months ago by ▴ 40 • written 21 months ago by ▴ 120
0
votes
4
replies
1.6k
views
Flye assembly of a bacterial genome stuck
assembly Flye
updated 21 months ago by 3.1k • written 21 months ago by ▴ 120
5
votes
2
replies
706
views
Assembly oxford nanopore data
assembly oxford nanopore
21 months ago by A_heath ▴ 120
0
votes
0
replies
301
views
Distinction of two very close bacterial strains
close strains mutations distinction
22 months ago by A_heath ▴ 120
0
votes
1
reply
435
views
Chosing a phylogenetic tree construction method
tree phylogenetic method
updated 22 months ago by ▴ 70 • written 22 months ago by ▴ 120
3
votes
3
replies
624
views
Phylogenetic tree of gene clusters
evolution clusters phylogeny
updated 23 months ago by 20k • written 23 months ago by ▴ 120
0
votes
1
reply
460
views
Detection of bacterial SNP using regular PCR primers
detection PCR SNP
updated 23 months ago by ▴ 120 • written 23 months ago by ▴ 120
5
votes
4
replies
817
views
Complete of Illumina raw reads
assembly illumina
23 months ago by A_heath ▴ 120
0
votes
0
replies
322
views
How to predict gene promoters in Lactobacillus?
lactobacillus promoters
23 months ago by A_heath ▴ 120
11
votes
4
replies
774
views
How to determine % similarity between genomes?
genome alignement mugsy mauve % identity
updated 2.0 years ago by 11k • written 2.0 years ago by ▴ 120
1
vote
5
replies
558
views
Mugsy percentage of identity
Mugsy Genome alignement
2.0 years ago by A_heath ▴ 120
16
votes
16
replies
1.4k
views
Species identifcation using 16s rRNA
16s rRNA identification species fasta
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 120
7
votes
3
replies
605
views
blastn with short sequences gives no results in the corresponding genome
blastn output primers
2.1 years ago by A_heath ▴ 120
0
votes
3
replies
608
views
How to add translation of CDS in Artemis?
Artemis /translation
2.2 years ago by A_heath ▴ 120
0
votes
1
reply
656
views
How to identify specific region using Mauve?
Mauve Specific region primers
2.3 years ago by A_heath ▴ 120
0
votes
7
replies
672
views
Mugsy error -directory must be a directory
error PATH directory Mugsy
2.3 years ago by A_heath ▴ 120
2
votes
3
replies
504
views
How to change standard genetic code in Artemis?
Artemis genetic code Mycosplasma
2.3 years ago by A_heath ▴ 120
0
votes
1
reply
739
views
Issue interpreting plasmidSPAdes output
plasmidSPAdes output interpreting results
2.3 years ago by A_heath ▴ 120
6
votes
4
replies
894
views
How to sort blast results by a minimum % of identical matches?
blast output sort identical matches
updated 2.4 years ago by 52k • written 2.4 years ago by ▴ 120
8
votes
2
replies
2.3k
views
How to edit fasta headers to keep only ID and organism?
fasta headers bash edit
updated 2.5 years ago by ★ 2.0k • written 2.5 years ago by ▴ 120
0
votes
3
replies
819
views
Download multiple protein sequences from IMG IDs
img ids download genes
2.5 years ago by A_heath ▴ 120
0
votes
0
replies
514
views
Contig extension using PRICE
price contig extension paired-ends
2.5 years ago by A_heath ▴ 120
1
vote
3
replies
574
views
How to determine plasmid or chromosomal origin?
plasmid chromosome origin
2.5 years ago by A_heath ▴ 120
9
votes
4
replies
1.1k
views
How to extend contigs from single-end reads?
contigs contig extension single-end reads
updated 2.5 years ago by ▴ 920 • written 2.5 years ago by ▴ 120
6
votes
4
replies
662
views
How to rename file titles that contain underscores?
bash underscores file titles
2.6 years ago by A_heath ▴ 120
5
votes
4
replies
483
views
How to correct a wrong protein extraction from FASTA file?
protein extraction fasta bash
updated 2.6 years ago by ▴ 500 • written 2.6 years ago by ▴ 120
11
votes
17
replies
1.2k
views
How to extract identical characters in multiple text files?
bash
updated 2 days ago by 38k • written 2.6 years ago by ▴ 120
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